View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_12 (Length: 345)
Name: NF10541_low_12
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 14926155 - 14925992
Alignment:
| Q |
1 |
tgggtacagtacacaagtaacttttgtattccatcatgaaagtgatctttcaatttaataactaatgaaaaattaatgaggaagagtgaagaacccaata |
100 |
Q |
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| T |
14926155 |
tgggtacagtacacaagtaacctttgtattccatcatgaaagtgatctttcaatttaataactaatgaaaaattaatgaggaagagtaaagaacccaata |
14926056 |
T |
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| Q |
101 |
atatcatgtggtgcgccaatgtgatattctaagaagtataaagttttaaactatactcagtgtt |
164 |
Q |
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| T |
14926055 |
atatcatgtggtgcgccaatgtgatattctaagaagtataaagttttaaactatactcagtgtt |
14925992 |
T |
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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 14925911 - 14925829
Alignment:
| Q |
245 |
gtattattaaaagcggaaaatcaacatgtactttcttttatcattacactaaaattaccaagtggggccattaagaaccaggg |
327 |
Q |
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| T |
14925911 |
gtattattaaaagcagaaaatcaacatgtactttcttttagcattacactaaaattaccaagtggggccattaagaaccaggg |
14925829 |
T |
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