View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_13 (Length: 305)
Name: NF10541_low_13
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 46438584 - 46438307
Alignment:
| Q |
19 |
atagcctgttacagaaataagaaaaatattcaaaagaaaatcgcttcaggaatggaactaattcagtgatatttatgacatttttcctcatcaatgttat |
118 |
Q |
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| T |
46438584 |
atagcctgttacagaaataagaaaaatattcaaaagaaaatcgcgtcaggaatggaactaattcagtgatatttatgacatttttcctcatcgatgttat |
46438485 |
T |
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| Q |
119 |
tttgaccattataataagatattctccaaatttatgcaaacatatataaaactgcattatcataactagctgcgtaccagcaagctctgactagacaaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46438484 |
tttgaccattataataagatattctccaaatttatgcaaacatatataaaactgcattatcataactagctgcgtaccagcaagctctgactagacaaag |
46438385 |
T |
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| Q |
219 |
cctctaccactgactttcctgcaaaaaagccgcgaccaagggggctgtatgctacaattccaatgccaagctctctgc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46438384 |
cctctaccactgactttcctgcaaaaaagccgcgaccaagggggctgtatgctacaattccaatgccaagctctctgc |
46438307 |
T |
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