View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10541_low_14 (Length: 302)
Name: NF10541_low_14
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_14 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0251 (2 HSPs) |
| | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 19199422 - 19199131
Alignment:
| Q |
1 |
tgtagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaactagatcacccctctcctgctggctgagggcatgtagag-aaact |
99 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||| |
|
|
| T |
19199422 |
tgtagtcaggaatggacgcaggggggttcataataggatgtgatactctacaaaaatagatcacccctctcctactggctgaggacatgtagagcaaact |
19199323 |
T |
|
| Q |
100 |
ctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccacta |
199 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||| |||||||| |
|
|
| T |
19199322 |
ctgcgaaggccataaccacgtcccctgccgtaagaggcccaatgtttgtaggaggcctgggaacagtttggacatactagtactgcctaagaacccactc |
19199223 |
T |
|
| Q |
200 |
tggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||||||||||| ||||||||| |
|
|
| T |
19199222 |
tggcaagtgacataccctcttgtatttgccggccatgatccatccggagcactagcatatgttctaaaaggacgtaatgtctcgttgtctct |
19199131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 264
Target Start/End: Complemental strand, 6778048 - 6777837
Alignment:
| Q |
54 |
aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga |
152 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||| ||||||||| |||||| | ||||||| || ||||| |||||| || | || |||||||||||||| |
|
|
| T |
6778048 |
aactggatcacccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtagga |
6777949 |
T |
|
| Q |
153 |
ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact |
252 |
Q |
| |
|
| ||| ||||||||| ||||||| |||||||||||| ||||| || | ||||||||| ||| || ||| ||| ||||||||||||||| ||| || |
|
|
| T |
6777948 |
gccctcagaatagtctggacatacccgtactgcctaagaaccctctctagcaagtgacggaccatcctgtcgttgtcggccatgatccatccggagcacc |
6777849 |
T |
|
| Q |
253 |
agcatatgtcct |
264 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6777848 |
agcatatgtcct |
6777837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 279
Target Start/End: Original strand, 1596237 - 1596454
Alignment:
| Q |
63 |
acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga |
161 |
Q |
| |
|
|||||||| ||| ||| ||||| ||||||||| |||||| ||||||| || ||||| |||||| || | || ||||||||||||||| ||| || |
|
|
| T |
1596237 |
acccctctgctgatgggtgaggacatgtagagcaaactccatgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtaggagccctcaga |
1596336 |
T |
|
| Q |
162 |
atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt |
261 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||| || ||||||||||| ||| || ||| ||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
1596337 |
atagtctggacatacctgtactgcctaagaacccgctttggcaagtgacggaccatcctgtcgctgctggccatgatccatccggagtaccagcatatgt |
1596436 |
T |
|
| Q |
262 |
cctgaaaggacgtaatgt |
279 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
1596437 |
cctgaaagggcgtgatgt |
1596454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 279
Target Start/End: Original strand, 34437781 - 34437997
Alignment:
| Q |
63 |
acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga |
161 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||| |||||| | |||| || | || ||||| | |||| || | || ||||||| ||||||| ||||||| |
|
|
| T |
34437781 |
acccctatcctgatggctgaggacatgtagagcaaactccgtgaagacc-tggccacgtcatccgccgcaataagctcaatgtcagtaggagccctggga |
34437879 |
T |
|
| Q |
162 |
atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt |
261 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||| || ||| || |||| ||| || || | ||| |||||||||||| |||||| ||||||||| |
|
|
| T |
34437880 |
atagtctgtacatacccgtactgcctaagaacccgctctggaaattgacggaccatcctgccactaccgaccatgatccatccggagtaccagcatatgt |
34437979 |
T |
|
| Q |
262 |
cctgaaaggacgtaatgt |
279 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
34437980 |
cctgaaagggcgtgatgt |
34437997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 34437674 - 34437721
Alignment:
| Q |
3 |
tagtcaggaatggacgcatggaggttcataataggatgtgatactcta |
50 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
34437674 |
tagtcaggaatgggcgcagggaggttcacaataggatgtgatactcta |
34437721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 21566054 - 21565966
Alignment:
| Q |
179 |
gtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa |
268 |
Q |
| |
|
||||||||| | ||||| || ||||||||||| ||| |||| | |||| ||||||||||||||| ||||||| |||| | ||||||||| |
|
|
| T |
21566054 |
gtactgcctcagaacccgctcgggcaagtgacacaccatcttttgtttgtcggccatgatccatccagagtac-agcacacgtcctgaaa |
21565966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 58 - 281
Target Start/End: Original strand, 43782700 - 43782924
Alignment:
| Q |
58 |
agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc |
156 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| ||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
43782700 |
agatcacccctctcctgctggctgaggacatgtagagcaaactccatggaggccatagccacgtcccttgacgcaagaggcccaatgtctgtaggaggca |
43782799 |
T |
|
| Q |
157 |
tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca |
256 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||| ||| | || |||||||||||| |||||| ||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
43782800 |
tgggtatagtctggacatactcgtattgcctaagaactcgctctggcaagtgacagaccctcatgtctttgccgaccatgatccatccagagtactagca |
43782899 |
T |
|
| Q |
257 |
tatgtcctgaaaggacgtaatgtct |
281 |
Q |
| |
|
|||||| ||||||| |||||||||| |
|
|
| T |
43782900 |
tatgtcgtgaaagggcgtaatgtct |
43782924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 63 - 279
Target Start/End: Complemental strand, 49000044 - 48999827
Alignment:
| Q |
63 |
acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga |
161 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||| |||||| | ||||||| ||| ||||| | |||| || | || ||||||||||||||| ||||||| |
|
|
| T |
49000044 |
acccctatcctgatggctgaggacatgtagagcaaactccgtgaaggcctgagccacgtcatccgccgcaataagctcaatgtctgtaggagccctggga |
48999945 |
T |
|
| Q |
162 |
atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt |
261 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||| || ||||||||||| ||| || ||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
48999944 |
atagtctagacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgttgccggccatgatccatccggagtaccagcatatgt |
48999845 |
T |
|
| Q |
262 |
cctgaaaggacgtaatgt |
279 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
48999844 |
cctgaaagggcgtgatgt |
48999827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 279
Target Start/End: Complemental strand, 45152899 - 45152677
Alignment:
| Q |
58 |
agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc |
156 |
Q |
| |
|
||||||||| ||||| | |||||||| ||||||||| |||||| |||||||||||| || ||| ||| || |||||||||||||||||||||| ||| |
|
|
| T |
45152899 |
agatcacccatctccagttggctgagaacatgtagagcaaactccatgaaggccatagccacatccgctgtcgcaagaggcccaatgtctgtaggatgcc |
45152800 |
T |
|
| Q |
157 |
tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca |
256 |
Q |
| |
|
| |||| ||||| ||||||| || ||||||||| ||||| || | |||||| | |||| | ||| ||||||||||||||||||||| |||||| | || |
|
|
| T |
45152799 |
taggaacagtctggacatacccgaactgcctaagaacccgctctagcaagtaatgaacccgcatgtctttgccggccatgatccatctggagtaccaaca |
45152700 |
T |
|
| Q |
257 |
tatgtcctgaaaggacgtaatgt |
279 |
Q |
| |
|
|||||||||||||| ||| |||| |
|
|
| T |
45152699 |
tatgtcctgaaagggcgtgatgt |
45152677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 40553596 - 40553736
Alignment:
| Q |
139 |
caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat |
238 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || ||||||||||| ||| || ||| ||||||||||||| |
|
|
| T |
40553596 |
caatgtctgtaggagccctgggaatagtctggacatactcgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgccggccatgat |
40553695 |
T |
|
| Q |
239 |
ccatctagagtactagcatatgtcctgaaaggacgtaatgt |
279 |
Q |
| |
|
||||| |||||| |||||||||| ||||||| ||| |||| |
|
|
| T |
40553696 |
ccatccggagtaccagcatatgtcatgaaagggcgtgatgt |
40553736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 291
Target Start/End: Original strand, 3375894 - 3376131
Alignment:
| Q |
54 |
aactagatcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga |
152 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||| |||||| || ||| ||| | |||||||||||| ||||||||| |
|
|
| T |
3375894 |
aactagatcaccc-tctcctgctggctgaggacatgtagagaaaactccatgaaggtcatagccacctcctctggcacaagaggcccaatatctgtagga |
3375992 |
T |
|
| Q |
153 |
ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact |
252 |
Q |
| |
|
| |||||| ||||| ||||||| ||| ||||||| ||||| || ||||||||||| ||| || ||| | | |||||||||||||||| |||||| |
|
|
| T |
3375993 |
gctctgggaccagtctggacatacatgtattgcctaagaacccgctctggcaagtgacggaccatcctgtctctaccggccatgatccatccggagtacc |
3376092 |
T |
|
| Q |
253 |
agcatatgtcctgaaaggacgtaatgtcttgttgtctct |
291 |
Q |
| |
|
| ||||||||||||||| || |||||| || |||||| |
|
|
| T |
3376093 |
aaaatatgtcctgaaagggcgccatgtctcgtcgtctct |
3376131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 33297214 - 33297343
Alignment:
| Q |
139 |
caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat |
238 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||| |||||||||||| ||||| || ||||||||||| ||| || ||| || |||||||||| |
|
|
| T |
33297214 |
caatgtctgtaggagccctgggaatagtctggtcatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgtcggccatgat |
33297313 |
T |
|
| Q |
239 |
ccatctagagtactagcatatgtcctgaaa |
268 |
Q |
| |
|
||||| |||||| |||||||||||||||| |
|
|
| T |
33297314 |
ccatccggagtaccagcatatgtcctgaaa |
33297343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 3375795 - 3375845
Alignment:
| Q |
2 |
gtagtcaggaatggacgcatggaggttcataataggatgtgatactctaca |
52 |
Q |
| |
|
|||||||||||||| |||| || |||||| ||||||||||| ||||||||| |
|
|
| T |
3375795 |
gtagtcaggaatggccgcaggggggttcacaataggatgtgctactctaca |
3375845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45153002 - 45152954
Alignment:
| Q |
1 |
tgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta |
50 |
Q |
| |
|
||||||||||||||| |||| || |||||| ||||||||||||||||||| |
|
|
| T |
45153002 |
tgtagtcaggaatggccgcaggg-ggttcacaataggatgtgatactcta |
45152954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 58 - 291
Target Start/End: Original strand, 180324 - 180558
Alignment:
| Q |
58 |
agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc |
156 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||| ||||| |||||| | |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
180324 |
agatcacccctctcctgctggctgaggacatgtagagcaaactccatgaaggtcatagccatgtcccctgccacaagaggcccaatgtttgtaggaggcc |
180423 |
T |
|
| Q |
157 |
tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca |
256 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| ||||| || |||||||||||| |||||| ||| |||| ||||||||||||||| |||||| | || |
|
|
| T |
180424 |
tgggaacagtctagacatacccgtactgcctaagaacccgctctggcaagtgacagaccctcctgtctttggcggccatgatccatccggagtaccaaca |
180523 |
T |
|
| Q |
257 |
tatgtcctgaaaggacgtaatgtcttgttgtctct |
291 |
Q |
| |
|
|||||||||||||| | |||||||| || |||||| |
|
|
| T |
180524 |
tatgtcctgaaagggcataatgtctcgtcgtctct |
180558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 60 - 279
Target Start/End: Complemental strand, 12627641 - 12627421
Alignment:
| Q |
60 |
atcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg |
158 |
Q |
| |
|
||||||||||| || ||||||||| |||||||||||| ||| |||||||||||| || || ||| || || || |||||||||||||||||||||| |
|
|
| T |
12627641 |
atcacccctctgttgttggctgaggacatgtagagaaaactccatgaaggccatagccaccgcctctggcgcaacagtcccaatgtctgtaggaggcctg |
12627542 |
T |
|
| Q |
159 |
ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcata |
258 |
Q |
| |
|
|||| ||||| | ||||| ||||||| ||| |||||||| ||||||||||| ||| || ||| |||||||||||||||||||||||||||| | |||| |
|
|
| T |
12627541 |
ggaacagtctgggcatacctgtactgcataagaacccactctggcaagtgacgaaccatcctgtctttgccggccatgatccatctagagtaccaccata |
12627442 |
T |
|
| Q |
259 |
tgtcctgaaaggacgtaatgt |
279 |
Q |
| |
|
|||||| ||||| ||| |||| |
|
|
| T |
12627441 |
tgtcctaaaagggcgtcatgt |
12627421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 53 - 291
Target Start/End: Original strand, 1326840 - 1327079
Alignment:
| Q |
53 |
aaactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagg |
151 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| ||||||||| |||||| ||||||| || | || ||||||| || |||||||||||||||||||| |
|
|
| T |
1326840 |
aaaccagatcacccctctcctgttggctgaggacatgtagagcaaactccatgaaggccgtaaccacctcccctggcgccagaggcccaatgtctgtagg |
1326939 |
T |
|
| Q |
152 |
aggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtac |
251 |
Q |
| |
|
|||| || ||| | | | ||||||| | |||||||||| | ||| | ||||||||||| |||||||||| | ||| |||||||||||||| |||||| |
|
|
| T |
1326940 |
aggcatgtgaacaatttggacatacccatactgcctaaaatcccgttctggcaagtgacggaccctcttgtctctgcaggccatgatccatccggagtac |
1327039 |
T |
|
| Q |
252 |
tagcatatgtcctgaaaggacgtaatgtcttgttgtctct |
291 |
Q |
| |
|
| |||||||||||||||| ||||||||| || |||||| |
|
|
| T |
1327040 |
caacatatgtcctgaaagggtgtaatgtctcgtcgtctct |
1327079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 38457624 - 38457493
Alignment:
| Q |
139 |
caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat |
238 |
Q |
| |
|
||||||||||||||| ||||||||||||| | |||| |||||||||||| |||| ||| ||||||||||| ||| || ||| ||||||||||||| |
|
|
| T |
38457624 |
caatgtctgtaggagcgctgggaatagtctgaatatacccgtactgcctaagaaccaactctggcaagtgacggaccatcatgtcgctgccggccatgat |
38457525 |
T |
|
| Q |
239 |
ccatctagagtactagcatatgtcctgaaagg |
270 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |
|
|
| T |
38457524 |
ccatccggagtaccagcatatgtcctgaaagg |
38457493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 26653712 - 26653528
Alignment:
| Q |
60 |
atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg |
158 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |||||| |||| ||| || ||||| || | | |||||||||||||| ||||| ||| ||| |
|
|
| T |
26653712 |
atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg |
26653613 |
T |
|
| Q |
159 |
ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc |
243 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||| | |||||||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
26653612 |
ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc |
26653528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 26925297 - 26925113
Alignment:
| Q |
60 |
atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg |
158 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |||||| |||| ||| || ||||| || | | |||||||||||||| ||||| ||| ||| |
|
|
| T |
26925297 |
atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg |
26925198 |
T |
|
| Q |
159 |
ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc |
243 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||| | |||||||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
26925197 |
ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc |
26925113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 269
Target Start/End: Complemental strand, 13274300 - 13274093
Alignment:
| Q |
63 |
acccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga |
161 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||||||| ||||| ||||||| || ||||| | ||| || | || ||||| ||||||||| ||||||| |
|
|
| T |
13274300 |
acccctatcctgatggctgaggacatgtagagaaaactctgtgaaggcctaggccacgtcatccaccgcaataagctcaatggctgtaggagccctggga |
13274201 |
T |
|
| Q |
162 |
atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt |
261 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||| || ||||||||||| || || ||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
13274200 |
atagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggacaatcctgtcgctgccggccatgatccatctggagtaccagcatatgt |
13274101 |
T |
|
| Q |
262 |
cctgaaag |
269 |
Q |
| |
|
||| |||| |
|
|
| T |
13274100 |
cctaaaag |
13274093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 279
Target Start/End: Complemental strand, 2743137 - 2742997
Alignment:
| Q |
139 |
caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat |
238 |
Q |
| |
|
||||||||||||||| |||| ||||||| | ||||||| |||||| ||||| ||||| || || ||||||| ||| || ||| |||||| |||||| |
|
|
| T |
2743137 |
caatgtctgtaggagccctgagaatagtttggacatacccgtacttcctaagaacccgctctgacaagtgatggaccatcctgtcgctgccggtcatgat |
2743038 |
T |
|
| Q |
239 |
ccatctagagtactagcatatgtcctgaaaggacgtaatgt |
279 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||| |||| |
|
|
| T |
2743037 |
ccatccggagtaccagcatatgtcctgaaagggcgtgatgt |
2742997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 21101479 - 21101423
Alignment:
| Q |
139 |
caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataaccc |
195 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
21101479 |
caatgtctgtaggagccctaggaatagtctggacatacacgtactgcctaagaaccc |
21101423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 24209211 - 24209332
Alignment:
| Q |
147 |
gtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctag |
246 |
Q |
| |
|
|||||||| ||| |||| |||||| |||| ||||||||||| | ||||| || ||||||||||| | || ||| |||| ||| ||||||||||| | |
|
|
| T |
24209211 |
gtaggaggtctgtgaatggtctaggcatagtcgtactgcctcagaacccgctctggcaagtgacggcacatcctgtctttgtcggtcatgatccatccgg |
24209310 |
T |
|
| Q |
247 |
agtactagcatatgtcctgaaa |
268 |
Q |
| |
|
||||| ||||||||||| |||| |
|
|
| T |
24209311 |
agtaccagcatatgtcccgaaa |
24209332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 279
Target Start/End: Original strand, 37227721 - 37227947
Alignment:
| Q |
54 |
aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga |
152 |
Q |
| |
|
|||| ||| |||||| || || ||||||||| ||||||||| |||||| | ||||||| || ||||| | |||| || | || |||||||||||||| |
|
|
| T |
37227721 |
aactggatgacccctatcttgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatccgccgcaataagctcaatgtctgtagga |
37227820 |
T |
|
| Q |
153 |
ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact |
252 |
Q |
| |
|
| |||||||||||||| ||||||| |||||||||||| ||||| || |||||||||| ||| || ||| || ||||||||||||||| ||||||| |
|
|
| T |
37227821 |
gccctgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgagggaccatcctgtcgatgtcggccatgatccatccggagtact |
37227920 |
T |
|
| Q |
253 |
agcatatgtcctgaaaggacgtaatgt |
279 |
Q |
| |
|
|||||||||||| ||||| ||| |||| |
|
|
| T |
37227921 |
agcatatgtcctaaaagggcgtgatgt |
37227947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 270
Target Start/End: Complemental strand, 14096846 - 14096700
Alignment:
| Q |
124 |
ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta |
223 |
Q |
| |
|
|||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||||||||||| || || || ||||||||||| ||| | ||| |
|
|
| T |
14096846 |
ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc |
14096747 |
T |
|
| Q |
224 |
tttgccggccatgatccatctagagtactagcatatgtcctgaaagg |
270 |
Q |
| |
|
|| |||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
14096746 |
gctgtcggccatgatccatctggagtactagcttatgtcctgaaagg |
14096700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 37227623 - 37227670
Alignment:
| Q |
3 |
tagtcaggaatggacgcatggaggttcataataggatgtgatactcta |
50 |
Q |
| |
|
||||||||||||| |||| || |||||| ||||||||||||||||||| |
|
|
| T |
37227623 |
tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta |
37227670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 270
Target Start/End: Original strand, 31116886 - 31117103
Alignment:
| Q |
54 |
aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga |
152 |
Q |
| |
|
|||| ||| |||||||| ||| ||||||||| ||||||||| ||||||| ||||| | || ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
31116886 |
aactggataacccctctgctgatggctgaggacatgtagagcaaactctatgaaggtctgggccacgtcatctgccgtaagaggcttaatgtctgtagga |
31116985 |
T |
|
| Q |
153 |
ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact |
252 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||| |||| ||| |||||||||||| ||| || | | | || ||||||||||||||| ||||| |
|
|
| T |
31116986 |
ggcctgggccgtgtctggacatacccgtactgcctaagaaccgactctggcaagtgacagaccatcctatctctgtcggccatgatccatccgaagtacc |
31117085 |
T |
|
| Q |
253 |
agcatatgtcctgaaagg |
270 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
31117086 |
agcatatatcctgaaagg |
31117103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 28035766 - 28035635
Alignment:
| Q |
160 |
gaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatat |
259 |
Q |
| |
|
||||||||| ||||||| | |||||||||| ||||| || | ||||||||| ||| || ||| |||||||||||||| ||| |||||| ||||||| |
|
|
| T |
28035766 |
gaatagtctggacatacccctactgcctaagaacccgctctagcaagtgacggaccatcatgtcgctgccggccatgatctatccggagtaccagcatat |
28035667 |
T |
|
| Q |
260 |
gtcctgaaaggacgtaatgtcttgttgtctct |
291 |
Q |
| |
|
||| ||||||| ||| |||| |||| |||||| |
|
|
| T |
28035666 |
gtcttgaaagggcgtgatgtgttgtcgtctct |
28035635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 28035972 - 28035925
Alignment:
| Q |
3 |
tagtcaggaatggacgcatggaggttcataataggatgtgatactcta |
50 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
28035972 |
tagtcaggaatggccgcatgggggttcacaataggatgtgatactcta |
28035925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 31116787 - 31116835
Alignment:
| Q |
2 |
gtagtcaggaatggacgcatggaggttcataataggatgtgatactcta |
50 |
Q |
| |
|
|||||||||||||| |||| || |||||| ||||||||||||||||||| |
|
|
| T |
31116787 |
gtagtcaggaatggccgcaggggggttcacaataggatgtgatactcta |
31116835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 148 - 270
Target Start/End: Complemental strand, 25147466 - 25147344
Alignment:
| Q |
148 |
taggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctaga |
247 |
Q |
| |
|
|||||| | |||||||||||| ||||||| |||||||||||| ||||| || |||||||||||| ||| || ||| |||||||||||||||||| || |
|
|
| T |
25147466 |
taggagccatgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacagaccatcctgtcgctgccggccatgatccatccgga |
25147367 |
T |
|
| Q |
248 |
gtactagcatatgtcctgaaagg |
270 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
25147366 |
gtaccagcatatgtcctgaaagg |
25147344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 279
Target Start/End: Original strand, 42705139 - 42705356
Alignment:
| Q |
63 |
acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga |
161 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||| |||||| | ||||||| || ||||| ||| || || | || ||||||||||||||| ||||||| |
|
|
| T |
42705139 |
acccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgtcgcaataagctcaatgtctgtaggagccctggga |
42705238 |
T |
|
| Q |
162 |
atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt |
261 |
Q |
| |
|
||||| | ||||| | |||||||||||| ||||| || ||||||||||| ||| || ||| ||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
42705239 |
atagtatggacatgcccgtactgcctaagaacccgctctggcaagtgacggaccttcatgtcgctgccgcccatgatccatccggagtaccaacatatgt |
42705338 |
T |
|
| Q |
262 |
cctgaaaggacgtaatgt |
279 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
42705339 |
cctgaaagggcgtgatgt |
42705356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 39465486 - 39465347
Alignment:
| Q |
139 |
caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat |
238 |
Q |
| |
|
|||||||||||| || |||| |||||||| ||||||| | |||||||||| |||| || |||||||| || ||| || ||| ||||||||||||| |
|
|
| T |
39465486 |
caatgtctgtagaagccctgagaatagtc--gacatacccatactgcctaagaaccggctctggcaagttacggaccatcctgtcgctgccggccatgat |
39465389 |
T |
|
| Q |
239 |
ccatctagagtactagcatatgtcctgaaaggacgtaatgtc |
280 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
39465388 |
ccatccggagtactagcatatgtcctgaaagggcgtgatgtc |
39465347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 3681143 - 3681088
Alignment:
| Q |
3 |
tagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaacta |
58 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
3681143 |
tagtcaggaatggtcgcaggggggttcataataggatgtgatactctaaaaaacta |
3681088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 25147659 - 25147612
Alignment:
| Q |
3 |
tagtcaggaatggacgcatggaggttcataataggatgtgatactcta |
50 |
Q |
| |
|
||||||||||||| |||| || |||||| ||||||||||||||||||| |
|
|
| T |
25147659 |
tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta |
25147612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 32305590 - 32305637
Alignment:
| Q |
3 |
tagtcaggaatggacgcatggaggttcataataggatgtgatactcta |
50 |
Q |
| |
|
||||||||||||| | ||||| |||||| ||||||||||||||||||| |
|
|
| T |
32305590 |
tagtcaggaatggccacatgggggttcacaataggatgtgatactcta |
32305637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 39465670 - 39465623
Alignment:
| Q |
3 |
tagtcaggaatggacgcatggaggttcataataggatgtgatactcta |
50 |
Q |
| |
|
||||||||||||| |||| || |||||| ||||||||||||||||||| |
|
|
| T |
39465670 |
tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta |
39465623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 32307880 - 32307986
Alignment:
| Q |
173 |
atactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggac |
272 |
Q |
| |
|
|||| |||||||||||| ||||| || |||||||||| ||| || ||| || ||||||||||||||| |||||| |||||||||||| ||||| | |
|
|
| T |
32307880 |
atacccgtactgcctaagaacccgctcaggcaagtgacggaccatcctgtcgctgtcggccatgatccatccggagtaccagcatatgtcctcaaagggc |
32307979 |
T |
|
| Q |
273 |
gtaatgt |
279 |
Q |
| |
|
|| |||| |
|
|
| T |
32307980 |
gtgatgt |
32307986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 279
Target Start/End: Complemental strand, 3680918 - 3680825
Alignment:
| Q |
186 |
ctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgt |
279 |
Q |
| |
|
|||| ||||| || ||||||||||| ||| |||||| |||||||||||||||||| ||||||||| || |||||| ||||| ||| |||| |
|
|
| T |
3680918 |
ctaagaacccgctctggcaagtgacggaccatcttgtcgctgccggccatgatccatccggagtactagtatgtgtcctcaaagggcgtgatgt |
3680825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 32305774 - 32305811
Alignment:
| Q |
139 |
caatgtctgtaggaggcctgggaatagtctagacatac |
176 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
32305774 |
caatgtctgtaggagccctgggaatagtctggacatac |
32305811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 42705035 - 42705079
Alignment:
| Q |
6 |
tcaggaatggacgcatggaggttcataataggatgtgatactcta |
50 |
Q |
| |
|
|||||||||| |||| || |||||| ||||||||||||||||||| |
|
|
| T |
42705035 |
tcaggaatggccgcaggggggttcacaataggatgtgatactcta |
42705079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 59 - 270
Target Start/End: Original strand, 16977 - 17192
Alignment:
| Q |
59 |
gatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggcca--tag-ctacgtcccctgccgtaagaggcccaatgtctgtaggagg |
154 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||||| |||||||| ||||| || ||| | | ||| |||||| || | || |||||||||||||| |
|
|
| T |
16977 |
gatcacccctctactgatggctgaggacatgtagagcaaactctgtgaagggcacctaggccatgtcatctgccgcaataagctaaatgtctgtaggagc |
17076 |
T |
|
| Q |
155 |
cctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactag |
254 |
Q |
| |
|
||| |||||||||| ||||||| |||||| ||||| ||||| || ||| ||||||| ||| || ||| ||| |||||||||||||| ||||||| || |
|
|
| T |
17077 |
cctcggaatagtctggacatacccgtactacctaacaacccgctctggaaagtgacggaccatcctgtcgctgctggccatgatccatccagagtaccag |
17176 |
T |
|
| Q |
255 |
catatgtcctgaaagg |
270 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17177 |
catatgtcctgaaagg |
17192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 16875 - 16922
Alignment:
| Q |
3 |
tagtcaggaatggacgcatggaggttcataataggatgtgatactcta |
50 |
Q |
| |
|
||||||||||||| |||| || |||||| ||||||||||||||||||| |
|
|
| T |
16875 |
tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta |
16922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 270
Target Start/End: Complemental strand, 7188 - 7042
Alignment:
| Q |
124 |
ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta |
223 |
Q |
| |
|
|||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||||||||||| || || || ||||||||||| ||| | ||| |
|
|
| T |
7188 |
ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc |
7089 |
T |
|
| Q |
224 |
tttgccggccatgatccatctagagtactagcatatgtcctgaaagg |
270 |
Q |
| |
|
|| |||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
7088 |
gctgtcggccatgatccatctggagtactagcttatgtcctgaaagg |
7042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 6285814 - 6285954
Alignment:
| Q |
139 |
caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat |
238 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||||| |||||||||||| ||||| || || |||||||| ||| || | | ||| |||||||| |
|
|
| T |
6285814 |
caatgtctataggagccctgggaatagtctggacatacccgtactgcctaagaacccgctctgccaagtgacggaccatcctatcgctgctagccatgat |
6285913 |
T |
|
| Q |
239 |
ccatctagagtactagcatatgtcctgaaaggacgtaatgt |
279 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||| ||| |||| |
|
|
| T |
6285914 |
ccatctggagtaccagcatatgtcctcaaagggcgtgatgt |
6285954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 35014454 - 35014337
Alignment:
| Q |
126 |
gccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatt |
225 |
Q |
| |
|
||||||| | || |||||| |||| ||| |||| ||||||||| ||||||| |||||||||||| ||||| || ||||||||||| ||| || ||| | |
|
|
| T |
35014454 |
gccgtaataagctcaatgtatgtacgagccctgtgaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgt |
35014355 |
T |
|
| Q |
226 |
tgccggccatgatccatc |
243 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
35014354 |
tgccgaccatgatccatc |
35014337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 2029818 - 2029728
Alignment:
| Q |
178 |
cgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa |
268 |
Q |
| |
|
|||||||||| | ||||| || ||||||||||| ||| |||| | |||||||||||||||||||| ||| ||| |||| | ||||||||| |
|
|
| T |
2029818 |
cgtactgcctcagaacccgctctggcaagtgacgcaccatcttctgtttgccggccatgatccatccagaataccagcacacgtcctgaaa |
2029728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 257345 - 257416
Alignment:
| Q |
139 |
caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgac |
210 |
Q |
| |
|
|||||||||| |||| |||| ||||||||| ||||||| |||||| ||||| ||||| || ||||||||||| |
|
|
| T |
257345 |
caatgtctgtgggagccctgagaatagtctggacatacccgtactacctaagaacccgctctggcaagtgac |
257416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 32353 - 32451
Alignment:
| Q |
170 |
gacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa |
268 |
Q |
| |
|
||||||| ||||| ||||| ||||| || ||||||||||| ||| || ||| | || ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
32353 |
gacatacctgtactacctaagaacccgctctggcaagtgacggaccatcatgtctctgttggccatgatccatctggagtaccagcatatgtcctgaaa |
32451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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