View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_16 (Length: 286)
Name: NF10541_low_16
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 12596003 - 12596265
Alignment:
| Q |
11 |
cataggtttcatttataggaaaaagatagtggatggttttgaaattcctttggatttagtagaggggccagctgaaagaattctaaaagcagtagagaat |
110 |
Q |
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| T |
12596003 |
cataggtttcatttataggaaaaagatagtggatggttttgaaattcctttggatttagtagaggggccagctgaaagaattctaaaagcagtagagaat |
12596102 |
T |
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| Q |
111 |
ttcaccacaagagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggattgaatgcgcatgagtcccttaagctcttcagtt |
210 |
Q |
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| T |
12596103 |
ttcaccacaagagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggtttgaatgcgcatgagtcccttaagctcttcagtt |
12596202 |
T |
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| Q |
211 |
atcatacttttagggaggcatggctaacaaaagacttcgcaattctctcaagagatgtagttg |
273 |
Q |
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|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
12596203 |
ttcatgcttttagggaggcaaggtcaacaaaagacttcgcaattctctcaagagatgtagttg |
12596265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 12243006 - 12243103
Alignment:
| Q |
18 |
ttcatttataggaaaaagatagtggatggttttgaaattcctttggatttagtagaggggccagctgaaagaattctaaaagcagtagagaatttcac |
115 |
Q |
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| T |
12243006 |
ttcatatatgggaaaaggagagtggatggttttgagattcccttggatttagtaggggagccagctgaaagaattctaaaatcagtagagaacttcac |
12243103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 15801356 - 15801427
Alignment:
| Q |
112 |
tcaccacaagagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggattgaatg |
183 |
Q |
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| T |
15801356 |
tcacaacaagagatgcacgtctacttgacatccttggagttgattttatttatgaagcggagggattgaatg |
15801427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 3313222 - 3313337
Alignment:
| Q |
112 |
tcaccacaagagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggattgaatgcgcatgagtcccttaagctcttcagtta |
211 |
Q |
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|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||||||| |||| |||||| | |
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| T |
3313222 |
tcacaacaagagatgtacgtctacttgatatccttggagttgactttatatatgaagcggagggattgaattcggttgagtcccttgagcttttcagtca |
3313321 |
T |
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| Q |
212 |
tcatacttttagggag |
227 |
Q |
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| T |
3313322 |
gcatgcgtttagggag |
3313337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 273
Target Start/End: Original strand, 3362600 - 3362753
Alignment:
| Q |
120 |
agagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggattgaatgcgcatgagtcccttaagctcttcagttatcatactt |
219 |
Q |
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| T |
3362600 |
agagatctgcgtgtacttaatatccttgaagttgattttatctatgaagcagaggaattgaatgctagtgagtcccttgagcttttctgtaaacatgctt |
3362699 |
T |
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| Q |
220 |
ttagggaggcatggctaacaaaagacttcgcaattctctcaagagatgtagttg |
273 |
Q |
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|| || |||| | |||| |||||||| |||||||||||||||||||||| |
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| T |
3362700 |
ttcggaaggcgattccaacacaagacttccttattctctcaagagatgtagttg |
3362753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 273
Target Start/End: Complemental strand, 3393283 - 3393130
Alignment:
| Q |
120 |
agagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggattgaatgcgcatgagtcccttaagctcttcagttatcatactt |
219 |
Q |
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| T |
3393283 |
agagatctgcgtgtacttaatatccttgaagttgattttatctatgaagcagagggattgaatgctagcgagtcccttgagcttttctgtggacatgctt |
3393184 |
T |
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| Q |
220 |
ttagggaggcatggctaacaaaagacttcgcaattctctcaagagatgtagttg |
273 |
Q |
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||||| ||| | | |||| |||||||| |||||||||||| ||||||||| |
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| T |
3393183 |
ttaggaaggtaattccaacagaagacttccttattctctcaagatatgtagttg |
3393130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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