View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_19 (Length: 275)
Name: NF10541_low_19
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 54745656 - 54745906
Alignment:
| Q |
14 |
caaatatcataaacactattgatgctgtgagtcaaaaattgagtcatgagtcacccatgtttcagtttttcctcaatgacctatttggaaatgacttcaa |
113 |
Q |
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| T |
54745656 |
caaatatcataaacactattgatgctgtgagtcaaaaattgagtcatgagtcacccatgtttcagtttttcctcaatgacctatttggaaatgacttcaa |
54745755 |
T |
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| Q |
114 |
taccacttttaagttactccctgattttataaaaatactacaagaagagaaaggacaaaagtttagtccatgtttctttagtggaacacctgggtctttt |
213 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54745756 |
taccacttttaagttactacctgattttataaaaagactacaagaagagaaaggacaaaagtttagtccatgtttctttagtggaacacctgggtctttt |
54745855 |
T |
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| Q |
214 |
tatgggagactcttccccgacaattccattcacttttttcattcctcctat |
264 |
Q |
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| T |
54745856 |
tatgggagactcttccccgacaattccattcacttttttcattcctcctat |
54745906 |
T |
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