View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_20 (Length: 265)
Name: NF10541_low_20
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 29438360 - 29438119
Alignment:
| Q |
14 |
caacaacatcaacagaatcttccacaattgcaacaacagctttcacaactgcgactgcaacatccacaacttcctcagcagcagcaagaaatgcaacaac |
113 |
Q |
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| T |
29438360 |
caacaacatcaacagaatcttccacaattgcaacaacagctttcacaactgcgactgcaacatccacaacttcctcagcagcagcaagaaatgcaacaac |
29438261 |
T |
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| Q |
114 |
aacgtcaacataatcttccacaattgctgcatcagttttcacaactgcaactgcagcagcagatggttggtgtcggaatgggtcaagcctgtgttcaagg |
213 |
Q |
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| T |
29438260 |
aacatcaacagaatcttccacaattgctgcatcagttttcacaactgcaactgcagcagcagatggttggtgtcggaatgggtcaaacctgtgttcaagg |
29438161 |
T |
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| Q |
214 |
tcctgaacactcacaaatggtttcccagggtcaagtttcatc |
255 |
Q |
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| T |
29438160 |
tcctggacactcacaaatggtttcccagggtcaagtttcatc |
29438119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 29438456 - 29438302
Alignment:
| Q |
17 |
caacatcaacagaatcttccacaattgcaacaacagctttcacaactgcgactgcaacatccacaacttcctca---gcagcagcaagaaatgcaacaac |
113 |
Q |
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| T |
29438456 |
caacaccagcagaatcttgtagaaatgcagcagcagctttcacaacttcgattgcagcgtcaacaacttcctcatcagcagcagcaagaaatacaacaac |
29438357 |
T |
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| Q |
114 |
aacgtcaacataatcttccacaattgctgcatcagttttcacaactgcaactgca |
168 |
Q |
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| T |
29438356 |
aacatcaacagaatcttccacaattgcaacaacagctttcacaactgcgactgca |
29438302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 29438520 - 29438453
Alignment:
| Q |
49 |
acagctttcacaactgcgactgcaacatccacaacttcctcagcagcagcaagaaatgcaacaacaac |
116 |
Q |
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| T |
29438520 |
acagctttcgcaacggcgactgcagcttcaacaacttcctcagcagcagcaagaaatgcaacatcaac |
29438453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 22526011 - 22526103
Alignment:
| Q |
166 |
gcagcagcagatggttggtgtcggaatgggtcaagcctgtgttcaaggtcct---gaacactcacaaatggtttcccagggtcaagtttcatc |
255 |
Q |
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| T |
22526011 |
gcagcaacaaatggttggtgctggaatgggtcaaacctatgttcaaggtcctggggggcgctcacaaatggtttctcagggacaagtttcatc |
22526103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 2785203 - 2785114
Alignment:
| Q |
166 |
gcagcagcagatggttggtgtcggaatgggtcaagcctgtgttcaaggtcctgaacactcacaaatggtttcccagggtcaagtttcatc |
255 |
Q |
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| T |
2785203 |
gcagcaacagatggttggtgctggaaggggtcaaaactatgttcaagatcctgggcgctcacaaacagtttctcagggacaagtttcatc |
2785114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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