View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10541_low_24 (Length: 256)
Name: NF10541_low_24
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 12640690 - 12640472
Alignment:
| Q |
1 |
tgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcaggagtggtgatgatcgtgacttgttggccatggga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||| |
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| T |
12640690 |
tgtgaaggcggaggaaaaacggatcgacgaaggagagagatttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgttggccatggga |
12640591 |
T |
|
| Q |
101 |
tgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttcaatggccgttcaactccgacactacct |
200 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||| |||| | || |
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| T |
12640590 |
tgcaaacaaagctgctatgtcacccaaaggaatcatatgaccaggtgctagaaatggaagtatgagaagtttcaatggccgttcaactccaacaccatct |
12640491 |
T |
|
| Q |
201 |
tccattgctgatcaatttt |
219 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
12640490 |
tccattgctgatcagtttt |
12640472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 48963324 - 48963446
Alignment:
| Q |
66 |
ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagt |
165 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| |
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|
| T |
48963324 |
ggagtggtgatgattgtgacttgttggccacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgcaagatatggaatgaagt |
48963423 |
T |
|
| Q |
166 |
aaagtttcaatggccgttcaact |
188 |
Q |
| |
|
|||||||||||| ||||||||| |
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|
| T |
48963424 |
gaagtttcaatggtcgttcaact |
48963446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 48959118 - 48959290
Alignment:
| Q |
2 |
gtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcaggagtggtgatgatcgtgacttgttggccatgggat |
101 |
Q |
| |
|
||||||||||||||| || ||||| || |||||||||||| ||||||| || | |||| |||||||||||||| || |||||||||||||||||| |
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|
| T |
48959118 |
gtgaaggcggaggaagaagggatcaacacttgagagagatttggtaaagaagtgggagttggagggagtggtgatgattgtcacttgttggccatgggat |
48959217 |
T |
|
| Q |
102 |
gcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttca |
174 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||| ||||||| | || |||||| |||| |||||||| |
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|
| T |
48959218 |
gcaaacagagttgctatgtcacacatggggatcatatgcccaggtgctggatatggaatgaagtgaagtttca |
48959290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 48966370 - 48966487
Alignment:
| Q |
66 |
ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagt |
165 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||||||| | |||||||||||||| || ||| |||||||| || |||| |||| |||||| |||| |
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|
| T |
48966370 |
ggagttgtgatgatggtgacttgttggccatgagatgcaaagatagttgctatgtcacacatagggatcatatggcctggtgctagatatggaatgaagt |
48966469 |
T |
|
| Q |
166 |
aaagtttcaatggccgtt |
183 |
Q |
| |
|
|||||||| ||| |||| |
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|
| T |
48966470 |
gaagtttcagtggtcgtt |
48966487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 12589331 - 12589219
Alignment:
| Q |
66 |
ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagt |
165 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||||||||||||| ||||| ||||||| | ||| |||||||| |||||||||||| |||||| |||| |
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|
| T |
12589331 |
ggagtggtggtgattgtgacttgttggccacgggatgcaaacagggttgcaatgtcacatagagggatcatatgcccaggtgatagatatggaatgaagt |
12589232 |
T |
|
| Q |
166 |
aaagtttcaatgg |
178 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
12589231 |
gaagttttaatgg |
12589219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 12482605 - 12482477
Alignment:
| Q |
60 |
ttggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaa |
159 |
Q |
| |
|
|||| ||||||||||||||| ||||| || |||||| | ||||||||||||||||| || | | || ||| |||||||| ||||||| | ||||||||| |
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|
| T |
12482605 |
ttggaaggagtggtgatgattgtgacatgatggccacgtgatgcaaacagagttgcaatcttgcacatagggatcatatgcccaggtgctggaaatggaa |
12482506 |
T |
|
| Q |
160 |
gcaagtaaagtttcaatggccgttcaact |
188 |
Q |
| |
|
|||| |||||||||||| ||||||||| |
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|
| T |
12482505 |
tgaagtgaagtttcaatggtcgttcaact |
12482477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 13441203 - 13441359
Alignment:
| Q |
28 |
cggaggagagagatttgctaaagaaatgagcattggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaa |
127 |
Q |
| |
|
|||| |||||||||||| | | | | ||||| |||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||| | |
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|
| T |
13441203 |
cggatgagagagatttggttagggattgagcgttggagggagtggtgatgattgtgacttgttggccacgggatgcaaacatagttgctatgtcacaaag |
13441302 |
T |
|
| Q |
128 |
aggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttcaatggccgttc |
184 |
Q |
| |
|
||| |||||||| |||| || |||| |||||| |||| || ||||| ||| ||||| |
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|
| T |
13441303 |
agggatcatatgtccagatgctagatatggaatgaagtgaattttcagtggtcgttc |
13441359 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 13449398 - 13449526
Alignment:
| Q |
60 |
ttggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaa |
159 |
Q |
| |
|
||||| ||||||||||||| || ||||| |||||| |||||||||||| ||||||||||||| | ||| |||||||| |||| || |||||||||| |
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|
| T |
13449398 |
ttggcgggagtggtgatgactgttacttgctggccacgggatgcaaacatagttgctatgtcaaaaagagggatcatatgtccagatgcaagaaatggaa |
13449497 |
T |
|
| Q |
160 |
gcaagtaaagtttcaatggccgttcaact |
188 |
Q |
| |
|
||||||| ||||||||| |||||||| |
|
|
| T |
13449498 |
tgaagtaaactttcaatggttgttcaact |
13449526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 13462425 - 13462572
Alignment:
| Q |
66 |
ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagt |
165 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||||||||| | ||||||||||| | ||| |||||||| |||| || |||| |||||| |||| |
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|
| T |
13462425 |
ggagtggtgatgactgtgacgtgttggccacgggatgcaaacataattgctatgtcaaaaagagggatcatatgtccagatgctagatatggaatgaagt |
13462524 |
T |
|
| Q |
166 |
aaagtttcaatggccgttcaactccgacactaccttccattgctgatcaat |
216 |
Q |
| |
|
||||||| ||| |||||||| | || ||||||||||||||| |||| |
|
|
| T |
13462525 |
gcagtttcagtggttgttcaacttctac---accttccattgctgaacaat |
13462572 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 12541714 - 12541792
Alignment:
| Q |
66 |
ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccag |
144 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| | ||| |||||||| |||| |
|
|
| T |
12541714 |
ggagtggtgatgattgtgacttgttggccatgtgatgcaaacaaagttgctatatcacaaagagggatcatatgtccag |
12541792 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 28386360 - 28386491
Alignment:
| Q |
57 |
gcattggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatg |
156 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||| | |||||||||| ||||||||| |||| | || |||||||| |||| || | || | | |
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|
| T |
28386360 |
gcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatatgtccagatgctggatacg |
28386459 |
T |
|
| Q |
157 |
gaagcaagtaaagtttcaatggccgttcaact |
188 |
Q |
| |
|
||| |||| |||||||||||| | ||||||| |
|
|
| T |
28386460 |
gaatgaagtgaagtttcaatggtctttcaact |
28386491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 3416683 - 3416622
Alignment:
| Q |
57 |
gcattggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctat |
118 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||||||||||||||||| || |||||| |
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|
| T |
3416683 |
gcattggagggagtggtgatgattgtgacatgttggccatgggatgcaaacatagctgctat |
3416622 |
T |
|
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