View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10541_low_25 (Length: 253)

Name: NF10541_low_25
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10541_low_25
NF10541_low_25
[»] chr7 (14 HSPs)
chr7 (25-184)||(17272705-17272864)
chr7 (30-161)||(29681776-29681906)
chr7 (25-98)||(7211866-7211939)
chr7 (35-128)||(7211947-7212040)
chr7 (46-186)||(43500011-43500148)
chr7 (36-99)||(25099327-25099390)
chr7 (25-101)||(46282874-46282951)
chr7 (25-73)||(32315713-32315761)
chr7 (36-86)||(32315790-32315840)
chr7 (25-98)||(4911698-4911771)
chr7 (46-86)||(6980948-6980988)
chr7 (46-86)||(42494799-42494839)
chr7 (22-76)||(29407496-29407550)
chr7 (18-55)||(29681903-29681940)
[»] chr3 (23 HSPs)
chr3 (25-186)||(11512393-11512554)
chr3 (25-186)||(22893891-22894051)
chr3 (35-152)||(31342023-31342140)
chr3 (51-152)||(20286936-20287037)
chr3 (37-99)||(36738279-36738341)
chr3 (43-83)||(17546997-17547037)
chr3 (17-73)||(48342785-48342841)
chr3 (25-76)||(29081700-29081751)
chr3 (121-177)||(29081598-29081655)
chr3 (19-76)||(32385358-32385415)
chr3 (46-99)||(32385436-32385489)
chr3 (37-73)||(48342320-48342356)
chr3 (45-88)||(29081625-29081668)
chr3 (57-87)||(16205747-16205777)
chr3 (38-100)||(20496553-20496614)
chr3 (17-55)||(22893890-22893928)
chr3 (18-76)||(31342108-31342165)
chr3 (142-187)||(25790897-25790942)
chr3 (142-179)||(49159502-49159539)
chr3 (150-182)||(5633181-5633213)
chr3 (22-54)||(5633181-5633213)
chr3 (15-55)||(11512517-11512557)
chr3 (16-76)||(36738362-36738422)
[»] chr1 (25 HSPs)
chr1 (24-187)||(50754729-50754892)
chr1 (25-186)||(28739304-28739465)
chr1 (43-186)||(9379842-9379985)
chr1 (25-186)||(28045325-28045486)
chr1 (43-186)||(9884865-9885008)
chr1 (43-143)||(6539593-6539693)
chr1 (51-153)||(15928097-15928200)
chr1 (114-186)||(44381908-44381981)
chr1 (17-76)||(10449446-10449505)
chr1 (119-186)||(35251165-35251234)
chr1 (119-182)||(49200058-49200122)
chr1 (46-186)||(10449447-10449579)
chr1 (32-76)||(28810061-28810105)
chr1 (18-73)||(44801751-44801806)
chr1 (18-76)||(44938794-44938852)
chr1 (43-80)||(4579192-4579229)
chr1 (17-55)||(28045449-28045487)
chr1 (17-55)||(28739303-28739341)
chr1 (17-55)||(44381907-44381945)
chr1 (57-99)||(44938872-44938914)
chr1 (51-88)||(719023-719060)
chr1 (142-179)||(6539683-6539720)
chr1 (60-101)||(49199994-49200035)
chr1 (18-55)||(50754854-50754891)
chr1 (18-70)||(593824-593876)
[»] chr2 (12 HSPs)
chr2 (43-186)||(39819087-39819230)
chr2 (43-186)||(12918557-12918700)
chr2 (27-186)||(15562212-15562371)
chr2 (25-152)||(7755342-7755469)
chr2 (25-174)||(13421692-13421841)
chr2 (19-99)||(34563326-34563406)
chr2 (190-230)||(8921552-8921592)
chr2 (46-86)||(18182591-18182631)
chr2 (128-179)||(39819060-39819112)
chr2 (142-186)||(12918498-12918543)
chr2 (18-55)||(12918663-12918700)
chr2 (18-55)||(39819193-39819230)
[»] chr6 (12 HSPs)
chr6 (25-186)||(2543735-2543895)
chr6 (25-186)||(11448063-11448224)
chr6 (18-98)||(369498-369578)
chr6 (18-76)||(16193830-16193888)
chr6 (46-186)||(16193757-16193888)
chr6 (18-75)||(28581731-28581788)
chr6 (30-86)||(2980786-2980842)
chr6 (35-96)||(35049754-35049816)
chr6 (18-55)||(11448187-11448224)
chr6 (17-55)||(2543734-2543772)
chr6 (46-99)||(28581810-28581863)
chr6 (45-101)||(1879187-1879243)
[»] chr4 (22 HSPs)
chr4 (43-186)||(31846782-31846925)
chr4 (45-152)||(6607420-6607527)
chr4 (44-186)||(31012152-31012294)
chr4 (45-170)||(6608375-6608500)
chr4 (109-185)||(2254622-2254698)
chr4 (35-95)||(54223569-54223629)
chr4 (25-99)||(11392307-11392379)
chr4 (113-179)||(46321429-46321496)
chr4 (18-76)||(36273058-36273116)
chr4 (35-85)||(38324924-38324974)
chr4 (35-96)||(41306689-41306750)
chr4 (43-100)||(43063542-43063599)
chr4 (28-76)||(30023646-30023694)
chr4 (119-184)||(32008336-32008402)
chr4 (22-76)||(33380606-33380660)
chr4 (22-72)||(53261093-53261143)
chr4 (45-86)||(9712943-9712984)
chr4 (46-86)||(22435379-22435419)
chr4 (130-184)||(15031965-15032020)
chr4 (128-179)||(31846900-31846952)
chr4 (25-73)||(40789263-40789311)
chr4 (128-179)||(54613030-54613082)
[»] chr5 (20 HSPs)
chr5 (25-186)||(5215560-5215722)
chr5 (25-159)||(9177863-9177997)
chr5 (43-159)||(29385303-29385419)
chr5 (43-170)||(19417469-19417595)
chr5 (51-187)||(36568736-36568872)
chr5 (51-101)||(1840003-1840053)
chr5 (27-99)||(23219360-23219432)
chr5 (18-100)||(896268-896350)
chr5 (35-158)||(25879328-25879447)
chr5 (35-88)||(42772054-42772107)
chr5 (38-101)||(31848177-31848239)
chr5 (120-180)||(7137637-7137698)
chr5 (43-99)||(7137665-7137721)
chr5 (18-62)||(41287997-41288041)
chr5 (17-72)||(12605660-12605715)
chr5 (128-179)||(29385394-29385446)
chr5 (48-87)||(5998620-5998659)
chr5 (51-81)||(37325634-37325664)
chr5 (149-187)||(41288004-41288042)
chr5 (142-179)||(19417442-19417479)
[»] chr8 (11 HSPs)
chr8 (45-186)||(43465112-43465256)
chr8 (46-187)||(31470771-31470914)
chr8 (114-186)||(16687512-16687585)
chr8 (142-186)||(1605038-1605082)
chr8 (18-75)||(4531845-4531902)
chr8 (46-150)||(7931550-7931655)
chr8 (17-55)||(16687511-16687549)
chr8 (46-96)||(33763539-33763589)
chr8 (43-76)||(31470845-31470878)
chr8 (35-72)||(45051343-45051380)
chr8 (22-66)||(33763461-33763505)
[»] scaffold0343 (2 HSPs)
scaffold0343 (142-187)||(12225-12270)
scaffold0343 (46-99)||(12285-12338)
[»] scaffold1315 (1 HSPs)
scaffold1315 (25-76)||(1819-1870)
[»] scaffold1293 (1 HSPs)
scaffold1293 (25-76)||(201-252)
[»] scaffold0001 (1 HSPs)
scaffold0001 (43-101)||(507740-507798)
[»] scaffold0110 (1 HSPs)
scaffold0110 (19-76)||(26500-26557)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 17272705 - 17272864
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 124  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||    
T  17272705 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacactt 17272804  T
Q  125 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattat 184  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  17272805 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 17272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 29681776 - 29681906
Alignment:
Q  30 ggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaac 129  Q
    |||| ||||||||||||||| ||||||||||||||| |||||| |||||||| || ||||| ||| ||||||       |||||||| ||||||||||||    
T  29681776 ggtgacattgtggttggtgacattggccaaccacaacgtcacatgtggctttttttttttttttt-acaagatatttttgttgttttacacacttgtaac 29681874  T
Q  130 attgtggttggtaatgtcaccaatatcaccaa 161  Q
    |||||||||||||||||||||||| |||||||    
T  29681875 attgtggttggtaatgtcaccaatgtcaccaa 29681906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 7211866 - 7211939
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 98  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  7211866 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 7212040 - 7211947
Alignment:
Q  35 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaa 128  Q
    ||||||||| || || |||||||||||||||||||||| ||| ||||||||||||||||||||||||       ||||||||||||||||||||    
T  7212040 cattgtggtgggagacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttttgttgttttgcacacttgtaa 7211947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 43500011 - 43500148
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 145  Q
    |||||||||| ||| ||||||||||||  || | ||||||||||||||||||||         ||||||||| ||  |||||||||||||||||||||||    
T  43500011 gtgatattggtcaatcacaatgtcacatatgacattcttctttttctttcacaa--tttttttgttgttttgtact-ttgtaacattgtggttggtaatg 43500107  T
Q  146 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    ||||||||||||||||| ||||| || ||||| ||||||||    
T  43500108 tcaccaatatcaccaaccacaatatcgcccaaatattatcc 43500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 25099390 - 25099327
Alignment:
Q  36 attgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 99  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  25099390 attgtggttggtgactttggtcaaccacaatgtcacaagtgtctttcttctttttctttcacaa 25099327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 46282874 - 46282951
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtgg-ctttcttctttttctttcacaaga 101  Q
    ||||| ||| |||||| |||||||| |||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  46282874 acttgagtgacattgtagttggtgacattggccaaccacaatatcacaagtggtttttcttctttctctttcacaaga 46282951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 32315713 - 32315761
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 73  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  32315713 acttgcgtgacattgtggttggtgacattggccaaccacaatgtcacaa 32315761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 32315840 - 32315790
Alignment:
Q  36 attgtggttggtgatattggccaaccacaatgtcacaagtggctttcttct 86  Q
    |||||||||||||| ||||| |||| ||||||||| |||||||||||||||    
T  32315840 attgtggttggtgacattggtcaactacaatgtcagaagtggctttcttct 32315790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 4911771 - 4911698
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 98  Q
    ||||||||| ||||||| | ||||||||||| |||| | ||||||||| |||  |||||||||| |||||||||    
T  4911771 acttgggtgacattgtgatcggtgatattggtcaactataatgtcacaggtgaatttcttctttctctttcaca 4911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 6980988 - 6980948
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttct 86  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  6980988 gtgacattggccaaccacaatgttacaagtggctttcttct 6980948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 42494799 - 42494839
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttct 86  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  42494799 gtgacattggcaaaccacaatgtcacaagtggctttcttct 42494839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 29407496 - 29407550
Alignment:
Q  22 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    ||||||||||||  ||||| || |||||||||||||||| ||||||||| |||||    
T  29407496 aatacttgggtgatattgtcgtcggtgatattggccaactacaatgtcataagtg 29407550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 29681940 - 29681903
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattgg 55  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  29681940 ggataatacttgggtgacattgtggttggtgacattgg 29681903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 11512393 - 11512554
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 124  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       | ||||||||||||||    
T  11512393 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgatgttttgcacactt 11512492  T
Q  125 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  11512493 gtaacattgtggttggtaatgtcaccaatgtcaccaaccataatgtcacccaagtattatcc 11512554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 22894051 - 22893891
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 124  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||       ||||||||| ||||||    
T  22894051 acttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt-gttgttttgtacactt 22893953  T
Q  125 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  22893952 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 22893891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 31342023 - 31342140
Alignment:
Q  35 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgt 134  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  31342023 cattgtggttggtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgt 31342122  T
Q  135 ggttggtaatgtcaccaa 152  Q
    ||||||||||||||||||    
T  31342123 ggttggtaatgtcaccaa 31342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 20286936 - 20287037
Alignment:
Q  51 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcacc 150  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  20286936 attggccaaccacaatgtcacatgtggctttcttctttttcttttacaagacttttttgttgttttgcacacttgtaacattgtggttggtaatgtcacc 20287035  T
Q  151 aa 152  Q
    ||    
T  20287036 aa 20287037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 36738279 - 36738341
Alignment:
Q  37 ttgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 99  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| | ||||||||    
T  36738279 ttgtggttggtgatattggtcaaccacaatatcacaagtgtctttcttctttctttttcacaa 36738341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 17546997 - 17547037
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttct 83  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  17546997 ttggtgatattggccaaccataatgtcacaagtggctttct 17547037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 48342785 - 48342841
Alignment:
Q  17 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 73  Q
    ||||||||||||||||| |||| ||||||| || ||||| |||||||||||||||||    
T  48342785 gggataatacttgggtgacattatggttggcgacattggtcaaccacaatgtcacaa 48342841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 29081751 - 29081700
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    |||||||||  |||||||||||||| ||||| ||||||||||||||||||||    
T  29081751 acttgggtgatattgtggttggtgacattggtcaaccacaatgtcacaagtg 29081700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 29081655 - 29081598
Alignment:
Q  121 acttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaa 177  Q
    |||||| |||||||||||||| ||||||||| || |||||||| ||||||||||||||    
T  29081655 acttgtgacattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaa 29081598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 32385358 - 32385415
Alignment:
Q  19 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    ||||||| ||||||| ||||||| ||||||| ||||| |||||||||||| |||||||    
T  32385358 gataatatttgggtgacattgtgattggtgacattggtcaaccacaatgtgacaagtg 32385415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 32385489 - 32385436
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 99  Q
    ||||||||||||||||||||||| | |||||  |||||||||| ||||||||||    
T  32385489 gtgatattggccaaccacaatgttaaaagtgtttttcttctttctctttcacaa 32385436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 48342356 - 48342320
Alignment:
Q  37 ttgtggttggtgatattggccaaccacaatgtcacaa 73  Q
    ||||||| |||||||||||||||||||||||||||||    
T  48342356 ttgtggtcggtgatattggccaaccacaatgtcacaa 48342320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 29081625 - 29081668
Alignment:
Q  45 ggtgatattggccaaccacaatgtcacaagtggctttcttcttt 88  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||    
T  29081625 ggtgacattgaccaaccacaatgtcacaagtagctttcttcttt 29081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 16205747 - 16205777
Alignment:
Q  57 caaccacaatgtcacaagtggctttcttctt 87  Q
    |||||||||||||||||||||||||||||||    
T  16205747 caaccacaatgtcacaagtggctttcttctt 16205777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 20496614 - 20496553
Alignment:
Q  38 tgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 100  Q
    |||||||||||| |||| | ||||||||||||||| ||| ||||||||| | |||||||||||    
T  20496614 tgtggttggtgacattgtc-aaccacaatgtcacacgtgactttcttctctctctttcacaag 20496553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 22893890 - 22893928
Alignment:
Q  17 gggataatacttgggtggcattgtggttggtgatattgg 55  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  22893890 gggataatacttgggtgacattgtggttggtgacattgg 22893928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 31342165 - 31342108
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    |||||||| ||||||| ||||||||||||||| |||  ||||||||||||| |||||||    
T  31342165 ggataatatttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtg 31342108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 25790897 - 25790942
Alignment:
Q  142 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 187  Q
    |||||||||||| |||||||| | |||||||||||| |||||||||    
T  25790897 aatgtcaccaatgtcaccaaccataatgtcacccaaatattatcca 25790942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 49159502 - 49159539
Alignment:
Q  142 aatgtcaccaatatcaccaacgacaatgtcacccaagt 179  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  49159502 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 49159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 5633181 - 5633213
Alignment:
Q  150 caatatcaccaacgacaatgtcacccaagtatt 182  Q
    ||||||||||||| |||||||||||||||||||    
T  5633181 caatatcaccaaccacaatgtcacccaagtatt 5633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 5633213 - 5633181
Alignment:
Q  22 aatacttgggtggcattgtggttggtgatattg 54  Q
    |||||||||||| ||||||||||||||||||||    
T  5633213 aatacttgggtgacattgtggttggtgatattg 5633181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 11512557 - 11512517
Alignment:
Q  15 aggggataatacttgggtggcattgtggttggtgatattgg 55  Q
    ||||||||||||||||||| |||| |||||||||| |||||    
T  11512557 aggggataatacttgggtgacattatggttggtgacattgg 11512517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 36738422 - 36738362
Alignment:
Q  16 ggggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    ||||| |||| ||||||| ||||||||||||||| ||||| |||| ||||| ||| |||||    
T  36738422 ggggaaaatatttgggtgacattgtggttggtgacattggtcaactacaatatcataagtg 36738362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 50754729 - 50754892
Alignment:
Q  24 tacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacact 123  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||       |||||||||||||||    
T  50754729 tactttggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttttgttgttttgcacact 50754828  T
Q  124 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 187  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  50754829 tgtaacattgtggttgataatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcca 50754892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 28739465 - 28739304
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 124  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||       ||| ||||||||||||    
T  28739465 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagatttttttgttattttgcacactt 28739366  T
Q  125 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  28739365 gtaacattgtggttggtaatgtcaccaatatcaccaaccacaatatcacccaagtattatcc 28739304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 9379842 - 9379985
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 142  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  9379842 ttggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggta 9379941  T
Q  143 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    |||| |||||| |||||||| |||||||||||||| ||||||||    
T  9379942 atgttaccaatgtcaccaaccacaatgtcacccaaatattatcc 9379985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 28045325 - 28045486
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngtt-gttttgcacact 123  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||        || |||||| |||||    
T  28045325 acttgggtgacattgtggttggtga-attggccaaccataatgtcacaagtggctttcttctttttctttaacaagattttcttttttgttttgtacact 28045423  T
Q  124 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  28045424 tgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 28045486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 9884865 - 9885008
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 142  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||    
T  9884865 ttggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttgata 9884964  T
Q  143 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    ||||||| ||| |||||||| ||||| |||||||||||| ||||    
T  9884965 atgtcacgaatgtcaccaaccacaatatcacccaagtatcatcc 9885008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 6539693 - 6539593
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 142  Q
    ||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  6539693 ttggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaagacttttttgttgttttgcacacttgtaacattgtggttggta 6539594  T
Q  143 a 143  Q
    |    
T  6539593 a 6539593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 15928200 - 15928097
Alignment:
Q  51 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga-nnnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcac 149  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||| |||||||||    
T  15928200 attggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttgttgttgttttgtacacttgtaacattgtggttgataatgtcac 15928101  T
Q  150 caat 153  Q
    ||||    
T  15928100 caat 15928097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 44381981 - 44381908
Alignment:
Q  114 tttgcacacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  44381981 tttgtacacgtgtaacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaaatattatcc 44381908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 10449446 - 10449505
Alignment:
Q  17 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  10449446 gggataatacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 10449505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 35251234 - 35251165
Alignment:
Q  119 acacttgtaacattgtggttggtaatgtcaccaatatcaccaacgaca--atgtcacccaagtattatcc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |  |||||| |||||||||||||    
T  35251234 acacttgtaacattgtggttggtaatgtcaccaatatcaccaaccatatcatgtcatccaagtattatcc 35251165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 49200058 - 49200122
Alignment:
Q  119 acacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtatt 182  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||    
T  49200058 acacttgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcacctaagtatt 49200122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 10449579 - 10449447
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 145  Q
    |||| ||||| ||||||||||||||||| |  ||||||||||| |||||||||| |       |||  |||| |||||||| ||||||||||||||        
T  10449579 gtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggt---- 10449484  T
Q  146 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
        |||| |||||||| |||||||||||||||||||||||    
T  10449483 ----caatgtcaccaaccacaatgtcacccaagtattatcc 10449447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 28810105 - 28810061
Alignment:
Q  32 tggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  28810105 tggcattgtggttggtgacattggtcaaccacaatgtcacaagtg 28810061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 44801751 - 44801806
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 73  Q
    ||||||||||| ||||  |||||||||| ||| |||||||||||||||||||||||    
T  44801751 ggataatacttaggtgatattgtggttgatgacattggccaaccacaatgtcacaa 44801806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 44938794 - 44938852
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    |||||| ||||||||| |||||||||| |||| |||| ||||||| |||||||||||||    
T  44938794 ggataacacttgggtgacattgtggttagtgacattgaccaaccagaatgtcacaagtg 44938852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 4579192 - 4579229
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctt 80  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4579192 ttggtgacattggccaaccacaatgtcacaagtggctt 4579229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 28045487 - 28045449
Alignment:
Q  17 gggataatacttgggtggcattgtggttggtgatattgg 55  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  28045487 gggataatacttgggtgacattgtggttggtgacattgg 28045449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 28739303 - 28739341
Alignment:
Q  17 gggataatacttgggtggcattgtggttggtgatattgg 55  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  28739303 gggataatacttgggtgatattgtggttggtgatattgg 28739341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 44381907 - 44381945
Alignment:
Q  17 gggataatacttgggtggcattgtggttggtgatattgg 55  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  44381907 gggataatatttgggtgacattgtggttggtgatattgg 44381945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 44938914 - 44938872
Alignment:
Q  57 caaccacaatgtcacaagtggctttcttctttttctttcacaa 99  Q
    |||||||||||  ||||||||||||||||||| ||||||||||    
T  44938914 caaccacaatggtacaagtggctttcttctttctctttcacaa 44938872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 719023 - 719060
Alignment:
Q  51 attggccaaccacaatgtcacaagtggctttcttcttt 88  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  719023 attggacaaccacaatgtcacaagtggcttttttcttt 719060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 6539683 - 6539720
Alignment:
Q  142 aatgtcaccaatatcaccaacgacaatgtcacccaagt 179  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  6539683 aatgtcaccaatatcatcaaccacaatgtcacccaagt 6539720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 49199994 - 49200035
Alignment:
Q  60 ccacaatgtcacaagtggctttcttctttttctttcacaaga 101  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  49199994 ccacaatgtcacaagtgacttttttctttttctttcataaga 49200035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 50754891 - 50754854
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattgg 55  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  50754891 ggataatacttgggtgacattgtggttggtgacattgg 50754854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 593876 - 593824
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtca 70  Q
    |||||||||||||||| |||| | |||||| |||||||  |||||||||||||    
T  593876 ggataatacttgggtgacattatagttggtaatattggttaaccacaatgtca 593824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 39819087 - 39819230
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 142  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  39819087 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaatattgtggttggta 39819186  T
Q  143 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  39819187 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 12918557 - 12918700
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 142  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||       ||||||||||||| ||||||||||||||||||||    
T  12918557 ttggtgacattggccaaccacaatgtcacatgtggcttttttctttttctttcataagacttttttgttgttttgcacatttgtaacattgtggttggta 12918656  T
Q  143 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  12918657 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 15562212 - 15562371
Alignment:
Q  27 ttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgt 126  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||  |||||  ||       ||||||||||||||||||    
T  15562212 ttgggtgacattgtggttgatgacattggccaaccacaatgtcacatgtgactttcttcttttttattcactggatttttttgttgttttgcacacttgt 15562311  T
Q  127 aacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  15562312 aacattgtgattggtaatgtcaccaatatcaccaaccataatgtcacccaaatattatcc 15562371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 7755342 - 7755469
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 124  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||       ||||||||| ||||||    
T  7755342 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgttttgtacactt 7755441  T
Q  125 gtaacattgtggttggtaatgtcaccaa 152  Q
    ||||||||||| ||||||||||||||||    
T  7755442 gtaacattgtgattggtaatgtcaccaa 7755469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 13421841 - 13421692
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 124  Q
    ||||||||| ||||||||||||||| |||| |||||||||| || ||| ||| ||||||| ||||||||| || |||       ||||||||  ||| ||    
T  13421841 acttgggtgacattgtggttggtgacattgaccaaccacaacgttacatgtgactttcttttttttcttttacgagatttttttgttgttttatacattt 13421742  T
Q  125 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacc 174  Q
    | |||||| |  ||| |||||||| |||| |||||||| || ||||||||    
T  13421741 gaaacattataattgataatgtcatcaatgtcaccaaccacgatgtcacc 13421692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 34563406 - 34563326
Alignment:
Q  19 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 99  Q
    |||||||||| |||| ||| ||||||||||| |||| |||||  |||||||||||||  |||||||| |||||||||||||    
T  34563406 gataatactttggtgacatcgtggttggtgacattgaccaacttcaatgtcacaagtatctttcttcattttctttcacaa 34563326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 8921552 - 8921592
Alignment:
Q  190 aacaggtaaactaattattggtaaggttctttgcttgcttg 230  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  8921552 aacaggtaaactaattattggcaaggttctttgcttgcttg 8921592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 18182631 - 18182591
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttct 86  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  18182631 gtgacattggcaaaccacaatgtcacaagtggctttcttct 18182591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 39819112 - 39819060
Alignment:
Q  128 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 179  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||||||    
T  39819112 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 39819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 12918543 - 12918498
Alignment:
Q  142 aatgtcaccaatatcaccaacgacaatgtcaccc-aagtattatcc 186  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||    
T  12918543 aatgtcaccaatgtcaccaaccacaatgtcacccaaagtattatcc 12918498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 12918700 - 12918663
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattgg 55  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  12918700 ggataatacttgggtgacattgtggttggtgacattgg 12918663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 39819230 - 39819193
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattgg 55  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  39819230 ggataatacttgggtgacattgtggttggtgacattgg 39819193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 2543895 - 2543735
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 124  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| || |||||||||||||| |       |||||||| |||||||    
T  2543895 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttttttttctttcacaa-atttttttgttgttttacacactt 2543797  T
Q  125 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  2543796 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 2543735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 11448063 - 11448224
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 124  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| | | || ||||| |||||||||||||||||         ||||||||||||||||    
T  11448063 acttgggtgacattgtggttggtaatattggccaaccacaatgttatatgtagcttttttctttttctttcacaaattttttttgttgttttgcacactt 11448162  T
Q  125 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11448163 ataacattgtggttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 369578 - 369498
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 98  Q
    |||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  369578 ggataatacttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcaca 369498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 16193888 - 16193830
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaagtg 16193830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 16193757 - 16193888
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 145  Q
    |||||||||||||| |||||||||||||||| ||||||||||| || ||||||| |        | |||||| |||||||| ||||||||||||          
T  16193757 gtgatattggccaatcacaatgtcacaagtgtctttcttctttctccttcacaatattttttt-tagttttgtacacttgtgacattgtggttg------ 16193849  T
Q  146 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
      |||||| |||||||| |||||||||||||||||||||||    
T  16193850 --accaatgtcaccaaccacaatgtcacccaagtattatcc 16193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 28581731 - 28581788
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagt 75  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||    
T  28581731 ggataatacttggctgacattgtggttggtgacattggccaaccacaatgtcataagt 28581788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 2980842 - 2980786
Alignment:
Q  30 ggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttct 86  Q
    |||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  2980842 ggtgacattgtggttggtgaaattggtcaaccataatgtcacaagtggctttcttct 2980786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 35049754 - 35049816
Alignment:
Q  35 cattgtggttggtgatattggccaaccacaatgtcacaagtggc-tttcttctttttctttca 96  Q
    ||||| |||||||||| ||| ||||||||||| | ||||||||| ||||||||||||||||||    
T  35049754 cattgcggttggtgatgttgaccaaccacaatattacaagtggcttttcttctttttctttca 35049816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 11448224 - 11448187
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattgg 55  Q
    |||||||||||||||| |||||||||||||||||||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattgg 11448187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 2543734 - 2543772
Alignment:
Q  17 gggataatacttgggtggcattgtggttggtgatattgg 55  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  2543734 gggataatacttgggtgacattgtggttggtgacattgg 2543772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 28581863 - 28581810
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 99  Q
    ||||||||| |||||  |||| ||||||||| ||||||||||| ||||||||||    
T  28581863 gtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttcacaa 28581810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 1879187 - 1879243
Alignment:
Q  45 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 101  Q
    ||||| ||||| |||||||||||||| ||||| ||||||||| | | ||||||||||    
T  1879187 ggtgacattggtcaaccacaatgtcataagtgactttcttctctatttttcacaaga 1879243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 31846925 - 31846782
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 142  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||    
T  31846925 ttggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattttggttggta 31846826  T
Q  143 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    ||||||| ||| |||||||| | |||||||||||||||||||||    
T  31846825 atgtcacgaatgtcaccaaccataatgtcacccaagtattatcc 31846782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 6607527 - 6607420
Alignment:
Q  45 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaat 144  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  6607527 ggtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaat 6607428  T
Q  145 gtcaccaa 152  Q
    ||||||||    
T  6607427 gtcaccaa 6607420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 31012152 - 31012294
Alignment:
Q  44 tggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaa 143  Q
    |||||| |||| ||||||||||||||||| ||| |||| |||||||||||||||||         ||||||||||| |||||||| ||||||||||||||    
T  31012152 tggtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttttgttgttttgcatacttgtaatattgtggttggtaa 31012251  T
Q  144 tgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    |||||| ||| |||||||| ||||||||||| |||||||||||    
T  31012252 tgtcactaatgtcaccaaccacaatgtcacctaagtattatcc 31012294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 6608375 - 6608500
Alignment:
Q  45 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnn-gttgttttgcacacttgtaacattgtggttggtaa 143  Q
    ||||| |||||||||||| ||||||||| ||||||| ||||||||||||||| ||||        ||||||||||| |||||||||||||||||||||||    
T  6608375 ggtgacattggccaaccataatgtcacacgtggcttccttctttttctttca-aagattctttttgttgttttgcagacttgtaacattgtggttggtaa 6608473  T
Q  144 tgtcaccaatatcaccaacgacaatgt 170  Q
    |||||||||| |||||||| |||||||    
T  6608474 tgtcaccaatgtcaccaaccacaatgt 6608500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 2254622 - 2254698
Alignment:
Q  109 gttgttttgcacacttgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatc 185  Q
    ||||||||| ||||||||||||||||| |||||||| ||| |||| |||| ||| ||||||||||  ||||||||||    
T  2254622 gttgttttgtacacttgtaacattgtgattggtaatatcatcaatgtcacgaaccacaatgtcacataagtattatc 2254698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 54223569 - 54223629
Alignment:
Q  35 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttc 95  Q
    ||||||||||||||| |||| |||||||||||||||||| || ||||||||||| ||||||    
T  54223569 cattgtggttggtgacattgaccaaccacaatgtcacaaatgtctttcttctttctctttc 54223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 11392307 - 11392379
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 99  Q
    ||||||||| ||||||||||| ||| ||||||| |||||||||||||||  ||||||||||| | ||||||||||    
T  11392307 acttgggtgacattgtggttgatgaaattggcctaccacaatgtcacaa--ggctttcttctctctctttcacaa 11392379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 46321429 - 46321496
Alignment:
Q  113 ttttgcacacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 179  Q
    ||||| ||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  46321429 ttttgtacagttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagt 46321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 36273116 - 36273058
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    |||||| ||||||||| ||||||||| |||||||||| ||||||||||| |||||||||    
T  36273116 ggataacacttgggtgacattgtggtcggtgatattgaccaaccacaatatcacaagtg 36273058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 38324974 - 38324924
Alignment:
Q  35 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttc 85  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  38324974 cattgtggttggtgatattggccaaccataatatcacatgtggctttcttc 38324924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 41306750 - 41306689
Alignment:
Q  35 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttca 96  Q
    |||||||||||||||||||| ||||||| |||||||||| ||  |||||||| |||||||||    
T  41306750 cattgtggttggtgatattgaccaaccataatgtcacaaatgtatttcttctctttctttca 41306689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 43063542 - 43063599
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 100  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||  |||||||||||||    
T  43063542 ttggtgacattagccaaccacaatgtcacaagtggctttcatcactttctttcacaag 43063599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 30023694 - 30023646
Alignment:
Q  28 tgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 30023646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 32008336 - 32008402
Alignment:
Q  119 acacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattat 184  Q
    |||||||||||||| |||||||| ||| |||| ||| |||||||| |||||||||||||||| ||||    
T  32008336 acacttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcacccaagtgttat 32008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 33380606 - 33380660
Alignment:
Q  22 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    ||||||| | || ||||||||||||||||||||| |||||||||||| |||||||    
T  33380606 aatacttagatgacattgtggttggtgatattggtcaaccacaatgtaacaagtg 33380660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 53261093 - 53261143
Alignment:
Q  22 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcaca 72  Q
    ||||||| |||| ||||||||||||||| |||| |||||||||||||||||    
T  53261093 aatacttaggtgacattgtggttggtgacattgaccaaccacaatgtcaca 53261143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 9712984 - 9712943
Alignment:
Q  45 ggtgatattggccaaccacaatgtcacaagtggctttcttct 86  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  9712984 ggtgacattgaccaaccacaatgtcacaagtggctttcttct 9712943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 22435379 - 22435419
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttct 86  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  22435379 gtgacattggcaaaccacaatgtcacaagtggctttcttct 22435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 15032020 - 15031965
Alignment:
Q  130 attgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattat 184  Q
    |||||||||||| |||||||| ||||||| |||| |||||||||||||||| ||||    
T  15032020 attgtggttggtcaatgtcacgaatatcatcaaccacaatgtcacccaagtgttat 15031965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 31846900 - 31846952
Alignment:
Q  128 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 179  Q
    |||||||||||||  ||| |||||||| |||||||| ||||||||||||||||    
T  31846900 acattgtggttggccaatatcaccaatgtcaccaaccacaatgtcacccaagt 31846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 40789311 - 40789263
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 73  Q
    ||||||||| ||| | | ||||||||||||||||| |||||||||||||    
T  40789311 acttgggtgacatagagtttggtgatattggccaatcacaatgtcacaa 40789263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 54613082 - 54613030
Alignment:
Q  128 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 179  Q
    |||||||||||||| |||| ||| ||| |||||||| ||||||||||||||||    
T  54613082 acattgtggttggtcaatgccactaatgtcaccaaccacaatgtcacccaagt 54613030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 5215722 - 5215560
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggcttt-cttctttttctttcacaagannnnnnngttgttttgcacact 123  Q
    ||||||||| ||||||||||| ||| ||||| |||||||||| ||||| |||||||| ||| ||||||||||||||||       ||||||||| |||||    
T  5215722 acttgggtgacattgtggttgatgacattggtcaaccacaatatcacatgtggcttttcttatttttctttcacaagattttgttgttgttttgtacact 5215623  T
Q  124 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  5215622 tgtaacattgtggttggtaatgtcaccaatgttaccaaccacaatgtcacccaagtattatcc 5215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 9177997 - 9177863
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 124  Q
    |||||| || |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |        |||||||||||||||    
T  9177997 acttggatgacattgtggttggtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttttattgttttgcacactt 9177898  T
Q  125 gtaacattgtggttggtaatgtcaccaatatcacc 159  Q
     ||||||||||||||||| ||||| |||| |||||    
T  9177897 ataacattgtggttggtagtgtcatcaatgtcacc 9177863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 29385419 - 29385303
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 142  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||       ||||||||||||||||||||||||||||||||||    
T  29385419 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcgctagatttttttgttgttttgcacacttgtaacattgtggttggta 29385320  T
Q  143 atgtcaccaatatcacc 159  Q
    || |||| ||| |||||    
T  29385319 atatcactaatgtcacc 29385303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 19417469 - 19417595
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 142  Q
    ||||||| ||||| |||| ||||||||||| ||| |||||||  |||||||||||||||       ||||||||||||||||| ||||||||||||||||    
T  19417469 ttggtgacattggtcaactacaatgtcacatgtgactttctttcttttctttcacaagatttttttgttgttttgcacacttg-aacattgtggttggta 19417567  T
Q  143 atgtcaccaatatcaccaacgacaatgt 170  Q
    ||||||||||| |||||||| |||||||    
T  19417568 atgtcaccaatgtcaccaaccacaatgt 19417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 36568736 - 36568872
Alignment:
Q  51 attggccaaccacaa-tgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcac 149  Q
    ||||| ||||||||| ||||||| |||||||||||| ||||||||||||| |       ||||||||| ||||||||||||||||||||| | |||||||    
T  36568736 attggtcaaccacaaatgtcacatgtggctttcttccttttctttcacaatatttttt-gttgttttgtacacttgtaacattgtggttgattatgtcac 36568834  T
Q  150 caatatcaccaacgacaatgtcacccaagtattatcca 187  Q
     ||| |||||||| ||||||||||  ||||||||||||    
T  36568835 taatgtcaccaaccacaatgtcacataagtattatcca 36568872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 1840003 - 1840053
Alignment:
Q  51 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1840003 attggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga 1840053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 23219432 - 23219360
Alignment:
Q  27 ttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 99  Q
    ||||||| |||||||||||||||  ||||||||||||||||||| |  || ||||||||||||||||||||||    
T  23219432 ttgggtgacattgtggttggtgaccttggccaaccacaatgtcatatatgactttcttctttttctttcacaa 23219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 896268 - 896350
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 100  Q
    |||||| |||||||||  |||||||||||||||||||  |||||||||||||||| | || |||||||||| ||||| |||||    
T  896268 ggataacacttgggtgagattgtggttggtgatattgatcaaccacaatgtcacaggcggttttcttctttctcttttacaag 896350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 25879447 - 25879328
Alignment:
Q  35 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgt 134  Q
    ||||||||||||||||||| |||||||||||||||||| |||  |||    |||||   ||||||||        |||||||  ||||||||||||||||    
T  25879447 cattgtggttggtgatattagccaaccacaatgtcacatgtgatttt----ttttttcgtcacaagacttttttattgttttatacacttgtaacattgt 25879352  T
Q  135 ggttggtaatgtcaccaatatcac 158  Q
    ||||| ||||||||||||||||||    
T  25879351 ggttgataatgtcaccaatatcac 25879328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 42772107 - 42772054
Alignment:
Q  35 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttcttt 88  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  42772107 cattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttcttt 42772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 31848177 - 31848239
Alignment:
Q  38 tgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 101  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||||||| | ||||||||||||    
T  31848177 tgtggttggtgatattgaccaaccacaaggtcacaagtgg-tttcttctctctctttcacaaga 31848239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 7137698 - 7137637
Alignment:
Q  120 cacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagta 180  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||  ||||||||||||||||    
T  7137698 cacttgtgacattgtggttggtcaatgtcaccaatttcaccaactgcaatgtcacccaagta 7137637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 7137665 - 7137721
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 99  Q
    ||||||| |||| ||||||||||||||||||||| |||||||| || ||||||||||    
T  7137665 ttggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaa 7137721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 41288041 - 41287997
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaacca 62  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||    
T  41288041 ggataatatttgggtgacattgtggttggtgatattggccaacca 41287997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 12605715 - 12605660
Alignment:
Q  17 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcaca 72  Q
    ||||||||||||  ||| ||||||||||||||| ||||| ||||||||||||||||    
T  12605715 gggataatacttaagtgacattgtggttggtgacattggtcaaccacaatgtcaca 12605660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 29385394 - 29385446
Alignment:
Q  128 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 179  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||||||    
T  29385394 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 29385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 5998659 - 5998620
Alignment:
Q  48 gatattggccaaccacaatgtcacaagtggctttcttctt 87  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  5998659 gatattggccaaccacaatatcacaagtgactttcttctt 5998620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 37325664 - 37325634
Alignment:
Q  51 attggccaaccacaatgtcacaagtggcttt 81  Q
    |||||||||||||||||||||||||||||||    
T  37325664 attggccaaccacaatgtcacaagtggcttt 37325634  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 41288004 - 41288042
Alignment:
Q  149 ccaatatcaccaacgacaatgtcacccaagtattatcca 187  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  41288004 ccaatatcaccaaccacaatgtcacccaaatattatcca 41288042  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 19417479 - 19417442
Alignment:
Q  142 aatgtcaccaatatcaccaacgacaatgtcacccaagt 179  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  19417479 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 19417442  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 43465112 - 43465256
Alignment:
Q  45 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacatt---gtggttggt 141  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||||       ||||||||||||||||||||||||   |||||||||    
T  43465112 ggtgacattggccaaccacaatatcacatgtggctttcttctttttttttcacaagatttttttgttgttttgcacacttgtaacattgtggtggttggt 43465211  T
Q  142 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    ||| |||||||| |||||||| | ||||||| |||||||||||||    
T  43465212 aatttcaccaatgtcaccaaccagaatgtcatccaagtattatcc 43465256  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 31470771 - 31470914
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 144  Q
    |||| |||| ||||||||||||||||||||  | |||||||||||||||||||| |       |||  |||| |||||||| |||||||||||||  |||    
T  31470771 gtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggccaat 31470870  T
Q  145 gtcaccaatatcaccaacgacaatgtca-cccaagtattatcca 187  Q
    |||||||||| ||||||| ||||| ||| |||||||||||||||    
T  31470871 gtcaccaataccaccaaccacaatatcaccccaagtattatcca 31470914  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 16687585 - 16687512
Alignment:
Q  114 tttgcacacttgtaacattgtggttgg-taatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    |||| |||||||  ||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||    
T  16687585 tttgtacacttgggacattgtggttagctaatgtcaccaatatcaccaaccacaatgtcatccaagtattatcc 16687512  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 1605038 - 1605082
Alignment:
Q  142 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 186  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  1605038 aatgtcaccaatgtcaccaactacaatgtcacccaagtattatcc 1605082  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 4531902 - 4531845
Alignment:
Q  18 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagt 75  Q
    |||||| |||| | || |||||| ||||||||||||| ||||||||||||||||||||    
T  4531902 ggataaaacttagatgacattgtagttggtgatattgaccaaccacaatgtcacaagt 4531845  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 7931655 - 7931550
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 144  Q
    |||| |||||| |||||||||||||||| || ||||||||||| ||||||| || |       |||  |||| |||||||| |||||||||||||| |||    
T  7931655 gtgacattggcaaaccacaatgtcacaaatgtctttcttctttctctttcataatatttttttgtttctttgtacacttgtgacattgtggttggtcaat 7931556  T
Q  145 gtcacc 150  Q
    ||||||    
T  7931555 gtcacc 7931550  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 16687511 - 16687549
Alignment:
Q  17 gggataatacttgggtggcattgtggttggtgatattgg 55  Q
    |||||||||||||| || |||||||||||||||||||||    
T  16687511 gggataatacttggatgacattgtggttggtgatattgg 16687549  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 33763589 - 33763539
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttca 96  Q
    |||| ||||| |||| ||||| ||||||||| |||||||||||||||||||    
T  33763589 gtgacattggtcaactacaatatcacaagtgcctttcttctttttctttca 33763539  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 31470878 - 31470845
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtg 76  Q
    ||||||| ||||||||||||||||||||||||||    
T  31470878 ttggtgacattggccaaccacaatgtcacaagtg 31470845  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 45051380 - 45051343
Alignment:
Q  35 cattgtggttggtgatattggccaaccacaatgtcaca 72  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  45051380 cattgtggttggtgacattggccgaccacaatgtcaca 45051343  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 33763461 - 33763505
Alignment:
Q  22 aatacttgggtggcattgtggttggtgatattggccaaccacaat 66  Q
    |||| ||||||| ||||||||||||||| ||||| ||||||||||    
T  33763461 aataattgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

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Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 12270 - 12225
Alignment:
Q  142 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 187  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||    
T  12270 aatgtcatcaatgtcaccaactacaatgtcacccaagtattatcca 12225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 12338 - 12285
Alignment:
Q  46 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 99  Q
    |||| |||| ||||||||||||||||||||| | ||||||||| ||||||||||    
T  12338 gtgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaa 12285  T

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Target: scaffold1315 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 1819 - 1870
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||    
T  1819 acttgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtg 1870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 252 - 201
Alignment:
Q  25 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||    
T  252 acttgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtg 201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 507740 - 507798
Alignment:
Q  43 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 101  Q
    ||||||| |||| |||| |||||| | |||||||| |||||||||| ||||||||||||    
T  507740 ttggtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaaga 507798  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 26500 - 26557
Alignment:
Q  19 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 76  Q
    ||||||||||  ||| ||||||||||||||| ||||| ||| |||||| |||||||||    
T  26500 gataatacttatgtgacattgtggttggtgacattggtcaaacacaatatcacaagtg 26557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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