View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10541_low_27 (Length: 251)

Name: NF10541_low_27
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10541_low_27
NF10541_low_27
[»] chr7 (9 HSPs)
chr7 (120-243)||(3312844-3312967)
chr7 (151-243)||(3311155-3311247)
chr7 (156-232)||(32945551-32945627)
chr7 (120-232)||(11508485-11508596)
chr7 (160-232)||(18147409-18147481)
chr7 (163-223)||(34707315-34707375)
chr7 (120-162)||(34707313-34707355)
chr7 (3-36)||(3311026-3311059)
chr7 (3-36)||(3312727-3312760)
[»] chr5 (3 HSPs)
chr5 (120-230)||(21143709-21143818)
chr5 (156-232)||(26658785-26658861)
chr5 (156-232)||(26930374-26930450)
[»] chr1 (6 HSPs)
chr1 (163-232)||(12484073-12484142)
chr1 (120-234)||(12786445-12786558)
chr1 (120-232)||(9131456-9131567)
chr1 (120-149)||(12484115-12484144)
chr1 (121-149)||(91837-91865)
chr1 (156-232)||(18513594-18513670)
[»] chr6 (5 HSPs)
chr6 (120-232)||(19893077-19893188)
chr6 (184-234)||(9548991-9549041)
chr6 (156-220)||(19565029-19565093)
chr6 (122-161)||(19565047-19565086)
chr6 (120-220)||(19566674-19566774)
[»] scaffold0019 (1 HSPs)
scaffold0019 (121-176)||(183153-183208)
[»] chr4 (4 HSPs)
chr4 (120-234)||(25126009-25126121)
chr4 (120-232)||(13884066-13884177)
chr4 (121-176)||(18873786-18873841)
chr4 (157-230)||(14645995-14646068)
[»] chr8 (2 HSPs)
chr8 (120-232)||(40391581-40391692)
chr8 (120-232)||(42147626-42147738)
[»] chr2 (3 HSPs)
chr2 (160-234)||(20263481-20263555)
chr2 (121-232)||(32623376-32623486)
chr2 (162-234)||(27386728-27386800)
[»] chr3 (2 HSPs)
chr3 (120-226)||(18705304-18705409)
chr3 (120-232)||(9733400-9733510)
[»] scaffold0005 (1 HSPs)
scaffold0005 (157-230)||(171222-171295)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 120 - 243
Target Start/End: Original strand, 3312844 - 3312967
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    |||||||||||||||||||| |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3312844 gagtttgttactaatctttttagattactatgtttacctctatgtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 3312943  T
Q  220 ttttgtaactacatccctttgcta 243  Q
    || ||||||||||||  |||||||    
T  3312944 ttctgtaactacatcaatttgcta 3312967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 3311155 - 3311247
Alignment:
Q  151 ttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactacatccctttgcta 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  3311155 ttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttctgtaactacatcactttgcta 3311247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 32945551 - 32945627
Alignment:
Q  156 cctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 232  Q
    ||||||| ||||||||||||| ||||| ||||||||||| || |||| |||||| ||||||| ||| ||||||||||    
T  32945551 cctctagatttgttactaatcttttcatattactatttgcacctctatattttgttactattatttctgtaactaca 32945627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 11508596 - 11508485
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    ||||||||||| ||| |||| |||||||||  | | |||| |||||||||||||||| ||||| |||||||| || || |||| || ||| ||||||| |    
T  11508596 gagtttgttaccaatttttttagattactatatgt-cctccaggtttgttactaatcttttcagattactatctgcacctctatatattgttactattat 11508498  T
Q  220 ttttgtaactaca 232  Q
    || |||| |||||    
T  11508497 ttctgtagctaca 11508485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 18147481 - 18147409
Alignment:
Q  160 taggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 232  Q
    |||||||||||| |||| ||||| |||||||| || || |||| |||||| |||||||||||  |||||||||    
T  18147481 taggtttgttaccaatcttttcagattactatctgcacctctatattttgttactattctttcagtaactaca 18147409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 34707315 - 34707375
Alignment:
Q  163 gtttgttactaatcatttcaaattactatttgtacttctagattttgctactattcttttt 223  Q
    |||||||||||||| |||||  ||||||||||||| ||||||| ||| ||||||| |||||    
T  34707315 gtttgttactaatcttttcaggttactatttgtacctctagatcttgttactatttttttt 34707375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 34707313 - 34707355
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctag 162  Q
    ||||||||||||||||||||||| |||||| || |||||||||    
T  34707313 gagtttgttactaatcttttcaggttactatttgtacctctag 34707355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 3311026 - 3311059
Alignment:
Q  3 atctctgtctcctttgcctattttctccacaacc 36  Q
    ||||| ||||||||||||||||||||||||||||    
T  3311026 atctcggtctcctttgcctattttctccacaacc 3311059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 3312727 - 3312760
Alignment:
Q  3 atctctgtctcctttgcctattttctccacaacc 36  Q
    |||||||| |||||||||||||||||||||||||    
T  3312727 atctctgtttcctttgcctattttctccacaacc 3312760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 21143818 - 21143709
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    ||||||||||| ||||||||||||||||||  | | ||||||||||||||||||||  ||||| | |||||||||||| ||||||||||| || ||||||    
T  21143818 gagtttgttaccaatcttttcagattactatatgt-cctctaggtttgttactaatattttcagaatactatttgtacatctagattttgttaatattct 21143720  T
Q  220 ttttgtaacta 230  Q
    |||||||||||    
T  21143719 ttttgtaacta 21143709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 26658785 - 26658861
Alignment:
Q  156 cctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 232  Q
    ||||||||||||||| | ||  ||||||||||||||||| || ||| || |||| ||||||| ||| ||||||||||    
T  26658785 cctctaggtttgttattgattttttcaaattactatttgcacctctcgaatttgttactattatttatgtaactaca 26658861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 26930374 - 26930450
Alignment:
Q  156 cctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 232  Q
    ||||||||||||||| | ||  ||||||||||||||||| || ||| || |||| ||||||| ||| ||||||||||    
T  26930374 cctctaggtttgttattgattttttcaaattactatttgcacctctcgaatttgttactattatttatgtaactaca 26930450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 12484142 - 12484073
Alignment:
Q  163 gtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 232  Q
    |||||||||||||| ||||| |||||||| || || ||||||||||| ||||||||||||||||||||||    
T  12484142 gtttgttactaatcttttcagattactatctgcacctctagattttgttactattctttttgtaactaca 12484073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 12786445 - 12786558
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    ||||||||||| |||||||| | |||||||  | | | ||||||||||||||||||| |||||||||||||| || || ||| || |||| ||||||  |    
T  12786445 gagtttgttaccaatctttttatattactatatgt-cttctaggtttgttactaatcttttcaaattactatctgcacctctcgaatttgttactatcat 12786543  T
Q  220 ttttgtaactacatc 234  Q
    || ||||| ||||||    
T  12786544 ttatgtaattacatc 12786558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 9131567 - 9131456
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    ||||||||||| |||| ||| |||||||| || |  |||||| |||||||||||||| |||||||||||||| |  || ||| || |||| ||| ||| |    
T  9131567 gagtttgttaccaatcgttttagattact-ctatgtcctctaagtttgttactaatcttttcaaattactatcttcacctctcgaatttgttaccatttt 9131469  T
Q  220 ttttgtaactaca 232  Q
    || ||||||||||    
T  9131468 ttctgtaactaca 9131456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 12484144 - 12484115
Alignment:
Q  120 gagtttgttactaatcttttcagattacta 149  Q
    ||||||||||||||||||||||||||||||    
T  12484144 gagtttgttactaatcttttcagattacta 12484115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 91837 - 91865
Alignment:
Q  121 agtttgttactaatcttttcagattacta 149  Q
    |||||||||||||||||||||||||||||    
T  91837 agtttgttactaatcttttcagattacta 91865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 18513670 - 18513594
Alignment:
Q  156 cctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 232  Q
    |||||| |||||||||||||| |||||||||||||| || || ||| || |||  || |||| ||| ||||||||||    
T  18513670 cctctaagtttgttactaatcttttcaaattactatctgcacctcttgaatttattattattatttctgtaactaca 18513594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 19893077 - 19893188
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    ||||||||||| |||||||| |||||||||  | | ||||||| ||||||||||||| ||||| |||||||| || || |||| |||||| ||||||| |    
T  19893077 gagtttgttaccaatctttttagattactatatgt-cctctagatttgttactaatcttttcagattactatctgcacctctatattttgatactattat 19893175  T
Q  220 ttttgtaactaca 232  Q
    || ||||||||||    
T  19893176 ttatgtaactaca 19893188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 9548991 - 9549041
Alignment:
Q  184 attactatttgtacttctagattttgctactattctttttgtaactacatc 234  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  9548991 attactatttgtacctctagattttgttactattcttcttgtaactacatc 9549041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 19565093 - 19565029
Alignment:
Q  156 cctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctt 220  Q
    ||||||||||||||||||||| ||||| |||||||||||||| ||||  ||||| ||| ||||||    
T  19565093 cctctaggtttgttactaatcttttcagattactatttgtacctctaatttttgttaccattctt 19565029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 19565086 - 19565047
Alignment:
Q  122 gtttgttactaatcttttcagattactacttttacctcta 161  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  19565086 gtttgttactaatcttttcagattactatttgtacctcta 19565047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 19566774 - 19566674
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctct-aggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattc 218  Q
    ||||||||||| |||||||| ||||||||| | |  ||||| || ||||||||||||  ||||||||||  |||||||| ||||  ||||| ||||||||    
T  19566774 gagtttgttaccaatctttttagattacta-tatgtcctctaagttttgttactaatattttcaaattatcatttgtacctctaatttttgttactattc 19566676  T
Q  219 tt 220  Q
    ||    
T  19566675 tt 19566674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 183153 - 183208
Alignment:
Q  121 agtttgttactaatcttttcagattactacttttacctctaggtttgttactaatc 176  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||||||||    
T  183153 agtttgttactaatcttttcagattactatatgtacctctaggtttgttactaatc 183208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 25126121 - 25126009
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    ||||||||||| |||||||| |||||||||  | | ||||||||||||||||||||| ||||||||||||||||| || | | || |||  ||||||| |    
T  25126121 gagtttgttac-aatctttttagattactaaatgt-cctctaggtttgttactaatcttttcaaattactatttgcaccttttgaatttattactattat 25126024  T
Q  220 ttttgtaactacatc 234  Q
    || ||||||||||||    
T  25126023 ttatgtaactacatc 25126009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 13884177 - 13884066
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    ||||||||||| || ||||| |||||||||  | | ||||||||||| |||  |||| ||||| |||||||||||||| ||||  ||||| |||||||||    
T  13884177 gagtttgttaccaaactttttagattactatatgt-cctctaggtttattaacaatcttttcagattactatttgtacctctaatttttgttactattct 13884079  T
Q  220 ttttgtaactaca 232  Q
    | | |||||||||    
T  13884078 tctcgtaactaca 13884066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 18873786 - 18873841
Alignment:
Q  121 agtttgttactaatcttttcagattactacttttacctctaggtttgttactaatc 176  Q
    ||||||||| |||||||||||||||||||  | |||||||| ||||||||||||||    
T  18873786 agtttgttattaatcttttcagattactatatgtacctctaagtttgttactaatc 18873841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 14645995 - 14646068
Alignment:
Q  157 ctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaacta 230  Q
    |||||||||||||||||||| |||||||||||||| || || |||  | |||| ||||||| ||| ||||||||    
T  14645995 ctctaggtttgttactaatcttttcaaattactatatgcacctctcaaatttgttactattatttctgtaacta 14646068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 40391581 - 40391692
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    ||||||||||| |||||||| | |||||||  | | ||||||| ||||||||| ||| ||| ||||||||||||| || ||| || |||| ||||||| |    
T  40391581 gagtttgttaccaatctttttatattactatatgt-cctctagttttgttacttatctttttaaattactatttgcacctctcgaatttgttactattat 40391679  T
Q  220 ttttgtaactaca 232  Q
    |||||||||||||    
T  40391680 ttttgtaactaca 40391692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 42147626 - 42147738
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatc-atttcaaattactatttgtacttctagattttgctactattc 218  Q
    ||||||||||| |||||||| ||||||||| | |  |||||| ||||||||||||||  |||||  ||||| ||||||| |||| |||||| ||||||||    
T  42147626 gagtttgttaccaatctttttagattacta-tatgtcctctatgtttgttactaatctttttcaggttactgtttgtacctctaaattttgttactattc 42147724  T
Q  219 tttttgtaactaca 232  Q
    ||  ||||||||||    
T  42147725 ttcgtgtaactaca 42147738  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 20263555 - 20263481
Alignment:
Q  160 taggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactacatc 234  Q
    ||||||||||||||||| |||||||||||||||||||| |||| |||||| |  ||| ||| || ||||||||||    
T  20263555 taggtttgttactaatcttttcaaattactatttgtacctctaaattttgtttatatacttcttctaactacatc 20263481  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 32623486 - 32623376
Alignment:
Q  121 agtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctt 220  Q
    ||||||| ||||||||||| |||||||||  | | | ||||||||||||||||||| |||||||||| ||| || || ||| || |||| ||||||| ||    
T  32623486 agtttgtcactaatctttttagattactatatgt-catctaggtttgttactaatcttttcaaattattatctgcacctcttgaatttgttactattatt 32623388  T
Q  221 tttgtaactaca 232  Q
    | |||| |||||    
T  32623387 tctgtagctaca 32623376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 27386800 - 27386728
Alignment:
Q  162 ggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactacatc 234  Q
    ||||||||||||||| |||||||||||||| || || |||  | |||| ||||||| ||| ||||||||||||    
T  27386800 ggtttgttactaatcttttcaaattactatctgcacctctcaaatttgttactattatttctgtaactacatc 27386728  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 18705409 - 18705304
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    ||||||||||| ||| |||| |||||||||  | | ||||||| ||||||||||||| |||||||||||||| |  || ||| || |||| ||||||| |    
T  18705409 gagtttgttaccaatatttttagattactatatgt-cctctagctttgttactaatcttttcaaattactatcttcacctcttgaatttgttactattat 18705311  T
Q  220 ttttgta 226  Q
    |||||||    
T  18705310 ttttgta 18705304  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 9733510 - 9733400
Alignment:
Q  120 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 219  Q
    |||| |||||| |||||||| |||||||||  | | |||| |||||||||||||||| |||||||||||||| || || |||| || ||| ||||||| |    
T  9733510 gagtatgttaccaatctttttagattactatatgt-cctccaggtttgttactaatc-tttcaaattactatctgcacctctatatattgttactattat 9733413  T
Q  220 ttttgtaactaca 232  Q
    || |||| |||||    
T  9733412 ttctgtagctaca 9733400  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 171295 - 171222
Alignment:
Q  157 ctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaacta 230  Q
    |||||||||||||||||||| |||||||||||||| || || |||  | |||| ||||||| ||| ||||||||    
T  171295 ctctaggtttgttactaatcttttcaaattactatatgcacctctcaaatttgttactattatttctgtaacta 171222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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