View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_29 (Length: 250)
Name: NF10541_low_29
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 1184486 - 1184724
Alignment:
| Q |
1 |
cgaacacaaaaagaagtaaaataacataattactaagtagttaattcactaattgaactaatttgatgcttgaacacatgctgcatgattaatgaattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1184486 |
cgaacacaaaaagaagtaaaataacataattactgagtagttaattcactaattgaactaatttgatgcttgaacacatgctgcatgattaatgaattgt |
1184585 |
T |
|
| Q |
101 |
tctcgaagccatcatcatccacattacannnnnnnnnnctttctttcacaaaacagtgagagagtatataatatggtcacactttcacagcacgcattga |
200 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
1184586 |
tctcgaagccatgatcatccacattaca--ttttttttctttctttcacaaaacagtgagagagtatataatatggtcacacttttacaccacgcattga |
1184683 |
T |
|
| Q |
201 |
aattctatagcttccacgttgttgtgatgcttctcctttgc |
241 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
1184684 |
aattctatagcttccacgttgttgtcatgcttctcttttgc |
1184724 |
T |
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