View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10541_low_3 (Length: 431)
Name: NF10541_low_3
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 26 - 413
Target Start/End: Original strand, 6352257 - 6352643
Alignment:
| Q |
26 |
gagatgaatgcactgagagcttagtcacatggcaggaagatcctttgataacattgagatgtgagaagtatacaagccattgcacctagggatccacgag |
125 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6352257 |
gagatgaatgcagtgagagcttagtcacatggcaggaagatcctttgataacattgagatgtgagaagtatacaagccattgcacctagggatccacgag |
6352356 |
T |
|
| Q |
126 |
tgtttgctttgtggcgtgtgatttcacaaacacactgcattattcttagcaaatttagacattgacatcaaatttttggtaaaagaagcaacatgaagat |
225 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6352357 |
cgcttgctttgttgcgtgtgatttcacaaacacactgcattattcttagcaaatttagacattgacatcaaatttttggtaaaagaagcaacatgaagat |
6352456 |
T |
|
| Q |
226 |
aaagaagttgatttaaataacacagaaatatnnnnnnnnttaaatcgaggctttaattgcggtgatagactgcaatttaaaaccatgttgaggtctactt |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
6352457 |
aaagaagttgatttaaataacacagaaatataaaaaaaattaaatcgaggctttaattgcggtcat-gactgcaatttaaaaccatgttgaggtctactt |
6352555 |
T |
|
| Q |
326 |
catttgctttgcggttggcgtcgcatgtagtagctgtaagcctgataaaggatagtcaccacagcaacaacaaatccgcaagcagaca |
413 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6352556 |
catttgctttgcgggtggcgtcgcatgtagtagctgtaagcctgataaaggatagtcaccacagcaacaacaaatccgcaagcagaca |
6352643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University