View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_30 (Length: 249)
Name: NF10541_low_30
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4785452 - 4785221
Alignment:
| Q |
1 |
tcagtagtggttgaattggtggtatgagacccatagtcatcactactacttgtgaaacacgtatcactcccatcatcagtaaaatgtgccaattctatcc |
100 |
Q |
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| T |
4785452 |
tcagtagaggttgaattggtggtatgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatcagtaaaatgtgacaattctatcc |
4785353 |
T |
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| Q |
101 |
tttgcttactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcact |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| |||||||| |
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| T |
4785352 |
tttgctcactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcact |
4785253 |
T |
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| Q |
201 |
cattgacattcgttgatttccatcgtcatgca |
232 |
Q |
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| T |
4785252 |
catcgacattcgttgatttccatcatcatgca |
4785221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4817881 - 4817650
Alignment:
| Q |
1 |
tcagtagtggttgaattggtggtatgagacccatagtcatcactactacttgtgaaacacgtatcactcccatcatcagtaaaatgtgccaattctatcc |
100 |
Q |
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| T |
4817881 |
tcagtagaggttgaattggtggtatgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatcagtaaaatgtgacaattctatcc |
4817782 |
T |
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| Q |
101 |
tttgcttactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcact |
200 |
Q |
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| T |
4817781 |
tttgctcactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcact |
4817682 |
T |
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| Q |
201 |
cattgacattcgttgatttccatcgtcatgca |
232 |
Q |
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| T |
4817681 |
catcgacattcgttgatttccatcatcatgca |
4817650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 4862525 - 4862619
Alignment:
| Q |
138 |
cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgca |
232 |
Q |
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| T |
4862525 |
cttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgca |
4862619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 4698670 - 4698576
Alignment:
| Q |
138 |
cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgca |
232 |
Q |
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| T |
4698670 |
cttagtatcctcctcacttatctccaactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatcatcatgca |
4698576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 4713546 - 4713460
Alignment:
| Q |
138 |
cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatc |
224 |
Q |
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| T |
4713546 |
cttaccatcctccccactcataaccaatttcaacgcaagctctaaagtcccaaccacatcactcatagacattcgttgatttccatc |
4713460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 4854916 - 4854830
Alignment:
| Q |
138 |
cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatc |
224 |
Q |
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| T |
4854916 |
cttactattctccccactcataaccaatttcaacgcaagctctaaagttccaaccacatcactcatagacatccgttgatttccatc |
4854830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 4642350 - 4642434
Alignment:
| Q |
148 |
tcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgca |
232 |
Q |
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| T |
4642350 |
tcctcactcaccaccaattgcaacgcaaactctaaacccccaaccacttgactcattgagggtcgttgaattccatcatcatgca |
4642434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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