View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_31 (Length: 246)
Name: NF10541_low_31
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 24438595 - 24438379
Alignment:
| Q |
20 |
tgaaatctactgttacaaaagctgttgccgaattccggcggacccatgctgacacatggaatgttcagaaagagttattcactaaagagcaacttgaggt |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24438595 |
tgaaatctactgttacaaaagctgttgcagaattccggcggacccatgctgacacatggaatgttcagaaagagttattcactaaagagcaacttgaggt |
24438496 |
T |
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| Q |
120 |
agctttctatgtagacgaaacgtattgtgctatgatttggaaaacgtaattattacttgtgttttttattttatatgtgttctaatgtttatttttcccc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24438495 |
agctttctatgtagacgaaacgtattgtgctatgatttggaaaacctaattattacttgtgttttttattttatatgtgtcctaatgtttatttttcccc |
24438396 |
T |
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| Q |
220 |
catattcacaggttctg |
236 |
Q |
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||||||||||| ||||| |
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| T |
24438395 |
catattcacagattctg |
24438379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 24463824 - 24463609
Alignment:
| Q |
20 |
tgaaatctactgttacaaaagctgttgccgaattccggcggacccatgctgacacatggaatgttcagaaagagttattcactaaagagcaacttgaggt |
119 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
24463824 |
tgaaatccactgttacaaaagctgttgcagaattccggcggacccatgctgacacatggaatgttcagaaagagttattcactgaagagcagcttgaggt |
24463725 |
T |
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| Q |
120 |
agctttctatgtagacgaaacgtattgtgctatgatttggaaaacgtaattattacttgtgttttttattttatatgtgttctaatgtttatttttcccc |
219 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
24463724 |
agcttt-tatgtagacgaaacatattgtgctatgatttggaaaacgtaattattacttgtgttttttattttatatgtgtcctaatgtttatttctcccc |
24463626 |
T |
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| Q |
220 |
catattcacaggttctg |
236 |
Q |
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||||||||||| ||||| |
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| T |
24463625 |
catattcacagattctg |
24463609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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