View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_32 (Length: 242)
Name: NF10541_low_32
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 23285807 - 23286030
Alignment:
| Q |
1 |
taatttaggataacaaaaatttattgaaaaaggtataggtcttcattgaatatggctatattaccttatacaccggtccaaatccaccttccccaagttt |
100 |
Q |
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| T |
23285807 |
taatttaggataacaaaaatttattgaaaaaggtaaaggtcttcattgaatatggctatattaccttatacactggtccaaatccaccttccccaagttt |
23285906 |
T |
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| Q |
101 |
atttgtgctagagaagttattagtggctttaacaaggattgaaaaatcaaatatcggtagatccatgtcttcctttatcaatctcgaatatacttgccgt |
200 |
Q |
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| T |
23285907 |
atttgtgctagagaagttataagtggctttaacaaggattgaaaaatcaaatatcggtagatccatgtcttcctttatcaatctcgaatatacttgcctt |
23286006 |
T |
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| Q |
201 |
ttctgaaatggtgcacgacgatat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
23286007 |
ttctgaaatggtgcacgacgatat |
23286030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 23392749 - 23392538
Alignment:
| Q |
13 |
acaaaaatttattgaaaaaggtataggtcttcattgaatatggctatattaccttatacaccggtccaaatccaccttccccaagtttatttgtgctaga |
112 |
Q |
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| T |
23392749 |
acaataatttattgaaaaaggttaaggtcttcattgaatatggctatattaccttatacactggtccaaatccaccttccccaagtttacttgtgctaga |
23392650 |
T |
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| Q |
113 |
gaagttattagtggctttaacaaggattgaaaaatcaaatatcggtagatccatgtcttcctttatcaatctcgaatatacttgccgtttctgaaatggt |
212 |
Q |
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| T |
23392649 |
aaagttattagtggctttaacaaggattgaaaaagcaaatatcggtagatccatgtcttcctttattaatctagaatatacttgccgtttctgaaatggt |
23392550 |
T |
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| Q |
213 |
gcacgacgatat |
224 |
Q |
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| T |
23392549 |
gcacgacgatat |
23392538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 23385117 - 23385002
Alignment:
| Q |
48 |
gaatatggctatattaccttatacaccggtccaaatccaccttccccaagtttatttgtgctagagaagttattagtggctttaacaaggattgaaaaat |
147 |
Q |
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| T |
23385117 |
gaataaggcaatattaccttataaaccggtccaaatccaccttccccaagtttatttctgctagaaaaattaccagttgctttaacaatgattggaaaac |
23385018 |
T |
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| Q |
148 |
caaatatcggtagatc |
163 |
Q |
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| T |
23385017 |
taaatattggcagatc |
23385002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 23342017 - 23342132
Alignment:
| Q |
48 |
gaatatggctatattaccttatacaccggtccaaatccaccttccccaagtttatttgtgctagagaagttattagtggctttaacaaggattgaaaaat |
147 |
Q |
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||||| ||| ||||||||||||| || |||||||||||||||||||||||||||||| ||||||| || ||| || |||||||||| ||||| |||| |
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| T |
23342017 |
gaataaggcaatattaccttataaactggtccaaatccaccttccccaagtttatttctgctagaaaaattaccggttgctttaacaatgattggaaaac |
23342116 |
T |
|
| Q |
148 |
caaatatcggtagatc |
163 |
Q |
| |
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|||||| || ||||| |
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| T |
23342117 |
taaatattggcagatc |
23342132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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