View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_33 (Length: 241)
Name: NF10541_low_33
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 935642 - 935430
Alignment:
| Q |
18 |
aacaggacaacctgtgactcaacgaagtgttaccaaatccattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgtaaaggtt |
117 |
Q |
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| T |
935642 |
aacaggacaacctgtgcctcaacgaagtgttaccaaatccattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgtaaaggtt |
935543 |
T |
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| Q |
118 |
acagaaagaatgtcattcaagaaattgaatcctgtttaattttcactctcatgtaatagcatgactaatctctaattgcttgtgattgtgcaatattaat |
217 |
Q |
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| T |
935542 |
acagaaagaatgtcattcaagaaattgaatcctgtttaattttcactctcatgtaatagcatgactaatctctaattgcttgtgattgtgcaatattaat |
935443 |
T |
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| Q |
218 |
tttgatatttcat |
230 |
Q |
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|||||| |||||| |
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| T |
935442 |
tttgatgtttcat |
935430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 937417 - 937201
Alignment:
| Q |
18 |
aacaggacaacctgtgactcaacgaagtgttaccaaatccattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgtaaaggtt |
117 |
Q |
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| T |
937417 |
aacaggacagtctgtgcctcaactaagtgttatgaaagccattcctgatgttatctttgtcccaacagctactattttagctctcattgctgttaaagtc |
937318 |
T |
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| Q |
118 |
acagaaagaatgtcattcaagaaattgaatcctgtttaattttcactc-tcat---gtaatagcatgactaatctctaattgcttgtgattgtgcaatat |
213 |
Q |
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| T |
937317 |
accaaaagaatgtcattgaagaaattgaatcctatttaattttctctcttgatgtagtaataacatgactaatctccaattgcttgtaattgtgcaatgt |
937218 |
T |
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| Q |
214 |
taattttgatatttcat |
230 |
Q |
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| T |
937217 |
ttagtttgatgtttcat |
937201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 7584365 - 7584526
Alignment:
| Q |
56 |
ccattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgtaaaggttacagaaagaatgtcattcaaga--aattgaatcctgtt |
153 |
Q |
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| T |
7584365 |
ccattcttgatgttatatctgtcccaacaactacagttttggctctcattactgtaaaagtcatctaaagaatgtctttcaagataaattgaatcctatt |
7584464 |
T |
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| Q |
154 |
taattttcactc-tcatg---taatagcatgactaatctctaattgcttgtgattgtgcaat |
211 |
Q |
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| T |
7584465 |
taatttcctttcttaatgtaataatagcatgattaatctccaatagcttgtgattgtgcaat |
7584526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 7585961 - 7586030
Alignment:
| Q |
81 |
aacagctacagtttaggctcttattgctgtaaaggttacagaaagaatgtcattcaagaaattgaatcct |
150 |
Q |
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| T |
7585961 |
aacagctacaattttggctctcattgctataaaagtcatcaaaagaatgtcatttaagaaattgaatcct |
7586030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 38410442 - 38410495
Alignment:
| Q |
57 |
cattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgt |
110 |
Q |
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| T |
38410442 |
cattcctgatgttatctttgttccctcagctacagttttggctctcattgctgt |
38410495 |
T |
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