View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_37 (Length: 230)
Name: NF10541_low_37
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 25480469 - 25480364
Alignment:
| Q |
17 |
ctttccatagggtcaaatacaatccgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaactaaaaccta |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25480469 |
ctttccatagggtcaaatacaatctgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaacttaaaccta |
25480370 |
T |
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| Q |
117 |
gttgaa |
122 |
Q |
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|||||| |
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| T |
25480369 |
gttgaa |
25480364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 25863636 - 25863741
Alignment:
| Q |
17 |
ctttccatagggtcaaatacaatccgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaactaaaaccta |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25863636 |
ctttccatagggtcaaatacaatctgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaacttaaaccta |
25863735 |
T |
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| Q |
117 |
gttgaa |
122 |
Q |
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|||||| |
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| T |
25863736 |
gttgaa |
25863741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 25606231 - 25606342
Alignment:
| Q |
21 |
ccatagggtcaaatacaatccgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaactaaaacctagttg |
120 |
Q |
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||||||| | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25606231 |
ccataggatgaaatacaatccgagactcactatgcatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaacttaaacctagttg |
25606330 |
T |
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| Q |
121 |
aatggctggtaa |
132 |
Q |
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||||||||||| |
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| T |
25606331 |
tatggctggtaa |
25606342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 25606452 - 25606484
Alignment:
| Q |
185 |
actctaaggaagtcgatatttgtaccaattcat |
217 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25606452 |
actctaaggaagtcgatatttgtaccaattcat |
25606484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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