View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10541_low_4 (Length: 430)

Name: NF10541_low_4
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10541_low_4
NF10541_low_4
[»] chr4 (5 HSPs)
chr4 (250-430)||(44574140-44574318)
chr4 (12-172)||(44574483-44574643)
chr4 (188-254)||(44574342-44574408)
chr4 (249-316)||(48795730-48795797)
chr4 (188-254)||(48795640-48795707)
[»] chr7 (2 HSPs)
chr7 (250-415)||(22489974-22490137)
chr7 (195-254)||(22490161-22490221)
[»] chr5 (3 HSPs)
chr5 (250-415)||(25383268-25383431)
chr5 (188-254)||(25383177-25383244)
chr5 (137-172)||(25383067-25383102)
[»] chr6 (5 HSPs)
chr6 (188-239)||(10123184-10123235)
chr6 (378-415)||(10123149-10123186)
chr6 (382-415)||(10123024-10123057)
chr6 (143-172)||(10123310-10123339)
chr6 (378-415)||(19306583-19306620)
[»] chr1 (3 HSPs)
chr1 (188-239)||(28244940-28244991)
chr1 (378-415)||(28244905-28244942)
chr1 (143-172)||(28245066-28245095)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 250 - 430
Target Start/End: Complemental strand, 44574318 - 44574140
Alignment:
Q  250 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574318 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 44574219  T
Q  350 cgctgccagttattattaagtcatccatatatatatgcacactgtaattgaggatgtttatgatttctttaaattccacgt 430  Q
    ||||||||||||||||||||||||||  ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  44574218 cgctgccagttattattaagtcatcc--atacatatgcacactataattaaggatgtttatgatttctttaaattccacgt 44574140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 44574643 - 44574483
Alignment:
Q  12 agagattagatttaaatttggttacatttggccttcattattataatttggtcaatcagttaaattcattttctttcaagaatacaaactcaaattttag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  44574643 agagattagatttaaatttggttacatttggccttcattattataatttggtcgatctgttaaattcattttctttcaagaatacaaactcaaattttag 44574544  T
Q  112 tttttcctatacattagcccccacttttcacaatacatgtacattgtgtcaatgatccaat 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574543 tttttcctatacattagcccccacttttcacaatacatgtacattgtgtcaatgatccaat 44574483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 44574408 - 44574342
Alignment:
Q  188 atgtctctgtaacattacacttcatcatattgaacatttttagcacctcataacataatttctttca 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574408 atgtctctgtaacattacacttcatcatattgaacatttttagcacctcataacataatttctttca 44574342  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 48795730 - 48795797
Alignment:
Q  249 ctttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttca 316  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  48795730 ctttcacaagtttccttccaagaaagtatgacaattattctatattagcatttcaaactcagacttca 48795797  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 48795640 - 48795707
Alignment:
Q  188 atgtctctgtaacattacacttcatcatattgaacatttttagcacctca-taacataatttctttca 254  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  48795640 atgtctttgtaacattacacttcatcatattgaacatttttagcacctcatttacataatttctttca 48795707  T

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Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 250 - 415
Target Start/End: Complemental strand, 22490137 - 22489974
Alignment:
Q  250 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 349  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22490137 tttcacaagtttcctttcaagaaagtatgacaattcttctatattagcatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 22490038  T
Q  350 cgctgccagttattattaagtcatccatatatatatgcacactgtaattgaggatgtttatgattt 415  Q
    ||||| ||| ||| ||||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  22490037 cgctgtcagatatcattaagtcatccatat--atatgcacactataattgaggatgtttatgattt 22489974  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 22490221 - 22490161
Alignment:
Q  195 tgtaacattacacttcatcatattgaacatttttagcacctca-taacataatttctttca 254  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  22490221 tgtaacattacacttcatcatattgaacatttttagcacctcacttacataatttctttca 22490161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 250 - 415
Target Start/End: Original strand, 25383268 - 25383431
Alignment:
Q  250 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 349  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25383268 tttcacaagtttcctttcaagaaagtatgacaattcttctatattagcatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 25383367  T
Q  350 cgctgccagttattattaagtcatccatatatatatgcacactgtaattgaggatgtttatgattt 415  Q
    ||||| ||| ||| ||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  25383368 cgctgtcagatatcattaagtcatcc--atatatatgcacactataattgaggatgtttatgattt 25383431  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 25383177 - 25383244
Alignment:
Q  188 atgtctctgtaacattacacttcatcatattgaacatttttagcacctca-taacataatttctttca 254  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  25383177 atgtctttgaaacattacacttcatcatattgaacatttttagcacctcatttacataatttctttca 25383244  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 25383067 - 25383102
Alignment:
Q  137 tttcacaatacatgtacattgtgtcaatgatccaat 172  Q
    ||||| ||||||||||||||||||||||||||||||    
T  25383067 tttcataatacatgtacattgtgtcaatgatccaat 25383102  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 10123235 - 10123184
Alignment:
Q  188 atgtctctgtaacattacacttcatcatattgaacatttttagcacctcata 239  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  10123235 atgtctttgaaacattacacttcatcatattgaacatttttagcacctcata 10123184  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 10123186 - 10123149
Alignment:
Q  378 atatatatgcacactgtaattgaggatgtttatgattt 415  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10123186 atatatatgcacactataattgaggatgtttatgattt 10123149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 415
Target Start/End: Complemental strand, 10123057 - 10123024
Alignment:
Q  382 atatgcacactgtaattgaggatgtttatgattt 415  Q
    ||||||||||| ||||||||||||||||||||||    
T  10123057 atatgcacactataattgaggatgtttatgattt 10123024  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 10123339 - 10123310
Alignment:
Q  143 aatacatgtacattgtgtcaatgatccaat 172  Q
    ||||||||||||||||||||||||||||||    
T  10123339 aatacatgtacattgtgtcaatgatccaat 10123310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 19306620 - 19306583
Alignment:
Q  378 atatatatgcacactgtaattgaggatgtttatgattt 415  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  19306620 atatatatgcacactataattaaggatgtttatgattt 19306583  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 28244991 - 28244940
Alignment:
Q  188 atgtctctgtaacattacacttcatcatattgaacatttttagcacctcata 239  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  28244991 atgtctttgaaacattacacttcatcatattgaacatttttagcacctcata 28244940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 28244942 - 28244905
Alignment:
Q  378 atatatatgcacactgtaattgaggatgtttatgattt 415  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  28244942 atatatatgcacactataattgaggatgtttatcattt 28244905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 28245095 - 28245066
Alignment:
Q  143 aatacatgtacattgtgtcaatgatccaat 172  Q
    ||||||||||||||||||||||||||||||    
T  28245095 aatacatgtacattgtgtcaatgatccaat 28245066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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