View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_41 (Length: 222)
Name: NF10541_low_41
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24637039 - 24637243
Alignment:
| Q |
1 |
tttttcggggaatccatataatttaaacatgaccaaaaaactaattttatttagaaattaaaaaatcatgtttatttttcttacaaagcttaggaatcca |
100 |
Q |
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| T |
24637039 |
tttttcggggaatccatataatttaaacatgaccaaaaaactaattttatttagaaattaaaaaatcatgtttatttttcttacaaagcttaggaatcca |
24637138 |
T |
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| Q |
101 |
atttgtgaattattaaaccgagaaacagataaaagggaccccaaaaaatgaatcactcaattggttcaattgcgtaaaataacaacatggatccgagtta |
200 |
Q |
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| T |
24637139 |
atttgtgaatcattaaactgagaaacagataaaagggaccccaaaaaatgaatcactcaattggttcaattgcgtaaaataacaacatggatccgagtta |
24637238 |
T |
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| Q |
201 |
ctgct |
205 |
Q |
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||||| |
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| T |
24637239 |
ctgct |
24637243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 24715589 - 24715669
Alignment:
| Q |
8 |
gggaatccatataatttaaacatgacca-aaaaactaattttatttagaaattaaaaaatcatgtttatttttcttacaaa |
87 |
Q |
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||||||||||||||||||||| |||| | |||||||||||| |||| |||||| ||||||||||||| ||||||| ||||| |
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| T |
24715589 |
gggaatccatataatttaaacttgacaataaaaactaatttcatttcgaaattgaaaaatcatgtttctttttctcacaaa |
24715669 |
T |
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