View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_45 (Length: 213)
Name: NF10541_low_45
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_45 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1482233 - 1482024
Alignment:
| Q |
1 |
atggtcagctggttagcatgaactagtgttccagtttgctcaatctcctcagttcccagtctctccctccttctctcaatcgcctaaacacaatattaac |
100 |
Q |
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| T |
1482233 |
atggtcagctggttagcatgaactggtgttccagtttgctcaatctcctcagttcccagtctctccctccttctctcaatcgcctaaacacaatattaac |
1482134 |
T |
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| Q |
101 |
aacactaaattaattcaaattcaaactaatcagatagaactaaatatacagaacactcatcatcacataacaaatcaacaaaacaacagaatattaacaa |
200 |
Q |
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| T |
1482133 |
aacactaaattaattcaaattcaaactaatcagatagaactaaatata---aacactcatcatcacataacaaatcaacaaaacaacagaatattaacaa |
1482037 |
T |
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| Q |
201 |
caataacttaatt |
213 |
Q |
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||||||||||||| |
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| T |
1482036 |
caataacttaatt |
1482024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 36717021 - 36716860
Alignment:
| Q |
1 |
atggtcagctggttagcatgaactagtgttccagtttgctcaatctcctcagttcccagtctctccctccttctctcaatcgcctaaacacaatattaac |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717021 |
atggtcagctggttagcatgaactggtgttccagtttgctcaatttcctcagttccctgtctctccctccttctctcaatcgcctaaacacaatattaac |
36716922 |
T |
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| Q |
101 |
aacactaaattaattcaaattcaaactaatcagatagaactaaatatacagaacactcatca |
162 |
Q |
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|||||||| ||| |||| ||||||| |||| |||| |||||||| |||||||| | |||||| |
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| T |
36716921 |
aacactaatttagttcatattcaaattaataagatggaactaaacatacagaaaattcatca |
36716860 |
T |
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