View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_5 (Length: 418)
Name: NF10541_low_5
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 408
Target Start/End: Original strand, 25702921 - 25703318
Alignment:
| Q |
12 |
catcatca-gagctataatcgattccatacacttgaaatccgtaacgcgccaaactttgagagttttatcccacgaacctgaatacaataacccttcttc |
110 |
Q |
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| T |
25702921 |
catcatcatgagctataatcgattccatacacttgaaatccgtaacgcgccaaactttgagagttttatcccacgaacctgaatacaacaacccttcttc |
25703020 |
T |
|
| Q |
111 |
ttggtccaaactcagactcgaaacagcgtcgaaatgcttcaccttcactgtgtttctccgtcgccggacttctacgtagttctttggattcatcgagctt |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25703021 |
ttgatccaaactcagactcgaaacagcgtcgaaatgcttcaccttcacggtgtttctccgtcgccggacttctacgtagttctttggattcatcgagctt |
25703120 |
T |
|
| Q |
211 |
ttgacatagtctttgaaagttggtaagcttccaatacgcttatgatttctagaattttttgaagaaattttccaaactctgatttttccatcttgatgac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25703121 |
ttgacatagtctttgaaagttggtaagcttccaatacgcttatgatttctagaattttttgaagaaattttccaaaccctgatttttccatcttgatgac |
25703220 |
T |
|
| Q |
311 |
cggtgaagatgtttccttcggatataacaatggttttgaccaaaccactacttgatttaaaaccggtataatctttaagttctttccacacccctatg |
408 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25703221 |
cggtgaagatgtttccttcggatataacaatggatttgaccaaaccactacttgatttaaaaccggtataatctttaagttctttccacacccttatg |
25703318 |
T |
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