View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10541_low_6 (Length: 406)
Name: NF10541_low_6
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 40557271 - 40556893
Alignment:
| Q |
18 |
gtagacctctccagtcaccattttccacttcttgaagcacatgtctttgtagagtataagattgggatccaacacggacacgtgcataccgacgatcttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||||| |
|
|
| T |
40557271 |
gtagacctctccagtcaccattttccacttcttgaagcacatgtctttgtagagtataagattgggatccaacacgaacacgggcataccaacaatcttc |
40557172 |
T |
|
| Q |
118 |
ttcctcccttttttcttttgaggcacataatccaaagacaattcctctgttggtgtcagaaagttctcttcaatcttacctattggaatggacaagcggc |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40557171 |
ttcctcccttttttattttgaggcacataatccaaagacaattcctctgttggtgtcagaaagttctcttcaatcttacctattggaatggacaagcggc |
40557072 |
T |
|
| Q |
218 |
tttgatctttgtccacgtcactcattgtcagttccttctggatcaccaacttcacctcacaacctcccatttgttccatcttttctttaaacaccaatgg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
40557071 |
tttgatctttgtccacgtcactcattgtcagttccttctggatcaccaacttcacctcacaaccttccatttgttcaatcttttctttaaacgccaatgg |
40556972 |
T |
|
| Q |
318 |
aagctccggtttctcttcttgcacctggttcttgcgtttctttgacggtttgcttgatcgttcattcttgtcttttctt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40556971 |
aagctccggtttctcttcttgcacctggttcttgcgtttctttgacggtttgcttgatcgttcattcttgtcttttctt |
40556893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University