View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_7 (Length: 376)
Name: NF10541_low_7
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 9283463 - 9283827
Alignment:
| Q |
1 |
aaatgtacagagaacaaaagtaattcataatgactgtttcaacaacaataaaataaagctaaataaatagttgctgcaacaatatatgacagaaagtcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9283463 |
aaatgtacagagaacaaaagtaattcataatgactgtttcaacaacaataaaataaagctaaataaatagttgctgcaacaatatatgacagaaagtcta |
9283562 |
T |
|
| Q |
101 |
gattctaattatcatccttactgctaatattgtaaatgtaagctgttgtgtcataaccacttaacgcaaaataaatagttgttgcaagtctgcaactatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9283563 |
gattctaattatcatccttactgctaatattgtaaatgtaagctgttgtgtcataaccacttaacgcaaaataaatagttgttgcaagtctgcaactatc |
9283662 |
T |
|
| Q |
201 |
attttcaactctcatatcccaaagcagcggttcattcatgtctctcatatgatgatggtttatcattcatatgatgttgtgcctnnnnnnntgagtggtt |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9283663 |
attttcaactctcatatcccaaagcagtggttcattcatgtctctcatatgatgatggtttatcattcatatgatgttgtgcctaaaaaaatgagtggtt |
9283762 |
T |
|
| Q |
301 |
cattcaattcatgtctctcattagatagccctttcaactcttatcttccaaagtagtttattcat |
365 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9283763 |
cattcaattcatgtctctcattaaatagccctttcaactcttatcttccaaagtagtttattcat |
9283827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 35051407 - 35051298
Alignment:
| Q |
172 |
taaatagttgttgcaagtctgcaactatcattttcaactctcatatcccaaagcagcggttcattcatgtctctcatatgatgatggtttatcattcata |
271 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||||| |||||||| || |||||||||||||| ||| || ||||||||||||| ||||| |
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| T |
35051407 |
taaatagtttctgcaagtctgcaacaatcatcttcaactctcatctcccaaagaagtggttcattcatgtc-ctc--attctgatggtttatcaatcata |
35051311 |
T |
|
| Q |
272 |
tgatgttgtgcct |
284 |
Q |
| |
|
|| |||||||||| |
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|
| T |
35051310 |
tggtgttgtgcct |
35051298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 284
Target Start/End: Original strand, 53324215 - 53324324
Alignment:
| Q |
172 |
taaatagttgttgcaagtctgcaactatcattttcaactctcatatcccaaagcagcggttcattcatgtctctcatatgatgatggtttatcattcata |
271 |
Q |
| |
|
||||||||| || ||||||||||| ||||| |||||||||| | | |||||| || |||||||||||||| ||| || |||||||||||||| ||||| |
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| T |
53324215 |
taaatagtttctgaaagtctgcaacaatcatcttcaactctcgtcttccaaagaagtggttcattcatgtc-ctc--attatgatggtttatcaatcata |
53324311 |
T |
|
| Q |
272 |
tgatgttgtgcct |
284 |
Q |
| |
|
|| |||||||||| |
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|
| T |
53324312 |
tggtgttgtgcct |
53324324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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