View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_8 (Length: 362)
Name: NF10541_low_8
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 3 - 347
Target Start/End: Complemental strand, 8866218 - 8865874
Alignment:
| Q |
3 |
caaaggttgaggatcttatataaaaccttggttatcaccaaagaatatgttaaaagcacgagtctcttaataattattaccaaaggaagtctcttcaagt |
102 |
Q |
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| T |
8866218 |
caaaggttgaggatcttatataaaaccttggttatcaccaaagaatatgttaaaagcacgagtctcttaataattattaccaaaggaagtctcttcaagt |
8866119 |
T |
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| Q |
103 |
ttaggtagaacgagtcgatgtaatattgctgattccctagcttagcattctcaacatgaacctcatgagttgaattaggaaaatgatttccataagttct |
202 |
Q |
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| T |
8866118 |
ttaggtagaacgagtcgatgtaatattgctgattcccaagcttagcattctcaacatgaacctcatgagttgaattaggaaaatgatttccataagttct |
8866019 |
T |
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| Q |
203 |
ctgcagccactcagctccaagtcttattatatcatcttcacaatccaccgccatcttaagctttggaggcggcttagttgaatttgtaagcaaaggtgca |
302 |
Q |
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| T |
8866018 |
ctgcagccactcggctccaagtcttattatttcatcttcacaatccaccgccatcttaagctttggaggcggcttagttgaatttgtaagcaaaggtgca |
8865919 |
T |
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| Q |
303 |
cttgtagaagttgcaagtaaatagccttgttgagaagtcaaatac |
347 |
Q |
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| T |
8865918 |
cttgtagaagttgcaagtaaatagccttgttgagaagtcaaatac |
8865874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 31862733 - 31862823
Alignment:
| Q |
80 |
taccaaaggaagtctcttcaagtttaggtagaacgagtcgatgtaatattgctgattccctagcttagcattctcaacatgaacctcatga |
170 |
Q |
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| T |
31862733 |
taccaaaggaagctttttcaagattaggaagaatgagtcaatgtaatattgctggtgacctagcctggcattctcttcatgaacttcatga |
31862823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 31862926 - 31862994
Alignment:
| Q |
279 |
gttgaatttgtaagcaaaggtgcacttgtagaagttgcaagtaaatagccttgttgagaagtcaaatac |
347 |
Q |
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| T |
31862926 |
gttgaatttgtaagtagagggtcatttgtggaagttgcaagcaaatagccctcttgagaggtcaaatac |
31862994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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