View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_9 (Length: 359)
Name: NF10541_low_9
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 10977003 - 10976673
Alignment:
| Q |
16 |
atggggtaaaaattgattatgagtacttcactgaaccagttagaatgagtctgctcgtatatatactccttcaaaggaagttatagcagctaacaaacta |
115 |
Q |
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| T |
10977003 |
atggggtaaaaattgattatgaatacctcacagaactagttagaatgagtctcttcctatatatactccttcaaaggaagttatagaagctaacaaagta |
10976904 |
T |
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| Q |
116 |
attaacttacaacgacgaattactaactaaatacagttgga-actagttctttaacaagctaatttgac-acnnnnnnnagttaagttttgcttggataa |
213 |
Q |
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| T |
10976903 |
actaacttacaacgaccaataactaactaaatacagttgaatactagttgtttagcaaggtaatttgactagtttttttagttaagctttacttggatta |
10976804 |
T |
|
| Q |
214 |
gnnnnnnnnnnnngttattaatgtaattatgatattttgtataatgttcaaa-acctctaaaatactaatcttgctttatttaaacatgcagaattttca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10976803 |
-agttttttttttgttattaatgtaattatgatattttgtataatgttcaaacacctctaaaatactaatcttgctttatttaaacatgcagaattttca |
10976705 |
T |
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| Q |
313 |
ttggataaggcactaaaatggtctgatagatt |
344 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
10976704 |
ccggataaggctctaaaatggtctgatagatt |
10976673 |
T |
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