View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_high_11 (Length: 220)
Name: NF10542_high_11
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_high_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 13140397 - 13140189
Alignment:
| Q |
16 |
caaaatgagaatatgtacttgattttacagttgtttgctctatttgtagatttttagatggacgataaatatgggcattttgacga----atttactcaa |
111 |
Q |
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| T |
13140397 |
caaaatgagaatatgtacttgatttgatagttgtttgctctatttgtagatttttagatggacgataaatatgggcattttgacgaaagcatttactcaa |
13140298 |
T |
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| Q |
112 |
agtttgggaaggagataagcgaataatttgatttaaggcgggannnnnnnncatttggtagaaattttggcagctcatgcatggtgtagcaaagatatgt |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
13140297 |
agttcgggaaggagataagcgaataatttgatttaaggagggattttttttcatttggtagaaattttggcagctcatgcatggtgtagcaaatagatgt |
13140198 |
T |
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| Q |
212 |
gcttatgac |
220 |
Q |
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||||||||| |
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| T |
13140197 |
gcttatgac |
13140189 |
T |
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