View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_high_2 (Length: 404)
Name: NF10542_high_2
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 24610244 - 24610025
Alignment:
| Q |
1 |
tgcttgaagcaggaggaagtgaagcaagtttcttgttgcaatgttacatattaaccaaacgttcattcattaacatgtcaagggactttggttactattg |
100 |
Q |
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| T |
24610244 |
tgcttgaagcaggaggaagtgaagcaagtttcttgttgcaatgttacatattaaccaaacgttccttcattaacatgtcaagggactttggttactattg |
24610145 |
T |
|
| Q |
101 |
gcttaggcttgtaatctacattgttgtcactatctgcattggaaccatttacttgaatgttggaactggctacaactcaattctggtacattctttttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24610144 |
gcttaggcttgtaatctacattgttgtcactatctgcattggaaccatttacttgaatgttggaactggctacaactcaattctggtacattctttttat |
24610045 |
T |
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| Q |
201 |
aatcctagagaaattcaaag |
220 |
Q |
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|||||||||||||||||||| |
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| T |
24610044 |
aatcctagagaaattcaaag |
24610025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 24609930 - 24609853
Alignment:
| Q |
314 |
gttcctgcaatgtggaatgatttaccattgtccaatgttattttgtttaattcatgtaatgtaatatttgttcatatt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24609930 |
gttcctgcaatgtggaatgatttaccattgtccaatgttattttgtttaattcatgtaatgtaatatttgtttatatt |
24609853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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