View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_1 (Length: 654)
Name: NF10542_low_1
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 174 - 632
Target Start/End: Original strand, 1396029 - 1396486
Alignment:
| Q |
174 |
ataaaattaaactgatatcnnnnnnngtggctgaaaagaaaccaaatctagtttagattttgatatacacacacaaatggtgggtgaaccctacattatt |
273 |
Q |
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| T |
1396029 |
ataaaattaaactgatatccatttttgtggctgaaaagaaaccaaatctggtttagattttgatatacac--acaaatggtgggtgaaccctacattatt |
1396126 |
T |
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| Q |
274 |
ttagggtaatcttcttgttgagtgtttaggtttttgccatcaataatcctacatgtgttttcttgttactctcgacctctagcgcctctctgtcaaaggc |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
1396127 |
ttagggtaatcttcttgttgagtgtttaggtttttgccatcaataatcctacatgtgttttcttgttactctcgacctttgtcgcctctctgtcaaaggc |
1396226 |
T |
|
| Q |
374 |
ttctctttttcttctattggatttggatttccatcactcaaaaccctttcgttgcaactcattaaattaaatggaattcaagatttcatgttgctgctag |
473 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1396227 |
ttctctttatcttctattggatttggatttccatcactcaaaaccctttcgttgcaactcattaaattaaatggaattcaagatttcatgttgcttctag |
1396326 |
T |
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| Q |
474 |
ctggatctctaattctcgaggatctacgattgtctgatatatgcattcattctgaggaatagcttgattctcttacaattcaatagtttgaaacctta-a |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
1396327 |
ctggatctctaattctcgaggatctacgattgtctgatatatacattcattctgaggaatagcttgattctcttaaaattcaatagtttgaaaccttata |
1396426 |
T |
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| Q |
573 |
gcttacccaaattgactaaagcagatatcagtcaatgtttgtattcatgttatacgatga |
632 |
Q |
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| T |
1396427 |
gcttacccaaattgactaaagcagatatcagtcaatgtttgtattcatgttatatgatga |
1396486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 200 - 632
Target Start/End: Original strand, 1407076 - 1407497
Alignment:
| Q |
200 |
gtggctgaaaagaaaccaaatctagtttagattttgatatacacacacaaatggtgggtgaaccctacattattttagggtaatcttcttgttgagtgtt |
299 |
Q |
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| T |
1407076 |
gtggctgaaaagaaaccaaatctggtttagattttgatatacaca----aatggtgggtgaaccctacattattttagggtaatcttcttgttgagtgtt |
1407171 |
T |
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| Q |
300 |
taggtttttgccatcaataatcctacatgtgttttcttgttactctcgacctctagcgcctctctgtcaaaggcttctctttttcttctattggatttgg |
399 |
Q |
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| T |
1407172 |
taggtttttgccatcaataatcctacatgtgttttcttgttactctcgaccgct-----------------ggcttctctttttcttctattggatttgg |
1407254 |
T |
|
| Q |
400 |
atttccatcactcaaaaccctttcgttgcaactcatta------aattaaatggaattcaagatttcatgttgctgctagctggatctctaattctcgag |
493 |
Q |
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| T |
1407255 |
atttccatcactcaaaaccctttcattgcaactcattaaaattaaattaaatggaattcaagatttcatgttgcttctagctggatctctaattctcgag |
1407354 |
T |
|
| Q |
494 |
gatctacgattgtctgatatatgcattcattctgaggaatagcttgattctcttacaattcaatagtttgaaaccttaagcttacccaaattgactaaag |
593 |
Q |
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| T |
1407355 |
gatctacgattgtctgatatatacattcattctaaggaatagcttgattctcttaccattcaatagttcgaaaccttaagcttacccaaattgactaaag |
1407454 |
T |
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| Q |
594 |
cagatatcagtcaa----tgtttgtattcatgttatacgatga |
632 |
Q |
| |
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| T |
1407455 |
cagatatcggtcaatgtttgtttgtattcatgttatatgatga |
1407497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 1406922 - 1407064
Alignment:
| Q |
18 |
gttgtctgatcatgcgttgttgtttagttcattgagtggtttctctagaagaatgtgactatatatgcatannnnnnnggtttgggctatttagcgagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||| |
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| T |
1406922 |
gttgtctgatcatgcgttgttgtttagttcattgagtggtttctctagaagaatgtgactatctatgcatatttttttggtttgggttatttggcgagaa |
1407021 |
T |
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| Q |
118 |
cgaaattcacgttgttgtctttagcacaaggaacaggtagtgt |
160 |
Q |
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| T |
1407022 |
cgaaattcacgttgttgtctttagcacaaggaacaggtagtgt |
1407064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 1025615 - 1025559
Alignment:
| Q |
360 |
tctctgtcaaaggcttctctttttcttctattggatttggatttccatcactcaaaa |
416 |
Q |
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| T |
1025615 |
tctctgttaagggtttttctttttcttccattggatttggatttccatcactcaaaa |
1025559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 1722953 - 1722916
Alignment:
| Q |
368 |
aaaggcttctctttttcttctattggatttggatttcc |
405 |
Q |
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|||||||| ||||||||||||| ||||||||||||||| |
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| T |
1722953 |
aaaggcttttctttttcttctactggatttggatttcc |
1722916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 35767595 - 35767662
Alignment:
| Q |
360 |
tctctgtcaaaggcttctctttttcttctattggatttggatttccatcactcaaaaccctttcgttg |
427 |
Q |
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||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
35767595 |
tctctgtcaaaggtttttctttttcttcaattggatttggatttccatcactcaaaaccctttggttg |
35767662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 335 - 427
Target Start/End: Original strand, 8315976 - 8316067
Alignment:
| Q |
335 |
cttgttactctcgacctctagcgcctctctgtcaaaggcttctctttttcttctattggatttggatttccatcactcaaaaccctttcgttg |
427 |
Q |
| |
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||||||| ||| |||||| | ||| |||||||||| ||||| | ||||| ||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
8315976 |
cttgttagtcttgacctccatcgcttctctgtcaagggctttttttttt-ttccattggatttggatttccatcactcaaaaccctttggttg |
8316067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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