View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10542_low_10 (Length: 316)

Name: NF10542_low_10
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10542_low_10
NF10542_low_10
[»] chr2 (1 HSPs)
chr2 (17-298)||(11733979-11734260)
[»] chr3 (1 HSPs)
chr3 (175-290)||(53148129-53148244)
[»] chr4 (4 HSPs)
chr4 (176-288)||(5530712-5530824)
chr4 (176-288)||(5922978-5923090)
chr4 (176-288)||(5936387-5936499)
chr4 (176-298)||(38178777-38178899)
[»] chr8 (2 HSPs)
chr8 (176-284)||(40919556-40919664)
chr8 (175-293)||(45319388-45319506)
[»] chr7 (1 HSPs)
chr7 (187-298)||(34839842-34839953)
[»] chr1 (1 HSPs)
chr1 (187-293)||(45454432-45454538)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 11733979 - 11734260
Alignment:
Q  17 acatcactaaaaactaaaaaggaaaataatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattctctaacaacacaactgcaattatc 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11733979 acatcactgaaaactaaaaaggaaaataatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattctctaacaacacaactgcaattatc 11734078  T
Q  117 tcaaaacaatacatattcaacatggctaaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcacaattctcagcttctttacgaaca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734079 tcaaaacaatacatattcaacatggctaaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcacaattctcagcttctttacgaaca 11734178  T
Q  217 acatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccga 298  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734179 acatcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaattattcccagcaccagactgaccga 11734260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 175 - 290
Target Start/End: Original strand, 53148129 - 53148244
Alignment:
Q  175 ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaat 274  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||    
T  53148129 ttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaat 53148228  T
Q  275 tattcccagcaccaga 290  Q
    |||| |||||||||||    
T  53148229 tattaccagcaccaga 53148244  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 5530824 - 5530712
Alignment:
Q  176 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 275  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||    
T  5530824 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5530725  T
Q  276 attcccagcacca 288  Q
    |||||||||||||    
T  5530724 attcccagcacca 5530712  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 5922978 - 5923090
Alignment:
Q  176 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 275  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||    
T  5922978 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5923077  T
Q  276 attcccagcacca 288  Q
    ||| |||||||||    
T  5923078 attaccagcacca 5923090  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 5936387 - 5936499
Alignment:
Q  176 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 275  Q
    |||| |||||||||||||  || ||||||||||| | ||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||    
T  5936387 taccctgcaagcaatcactgttttcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagtt 5936486  T
Q  276 attcccagcacca 288  Q
    ||| |||||||||    
T  5936487 attaccagcacca 5936499  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 38178777 - 38178899
Alignment:
Q  176 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 275  Q
    |||||||||||||||| ||||||||||| ||||| |  |||||||| | ||| |||||||| | |||||| |||||||| ||||||||||| ||||||||    
T  38178777 taccttgcaagcaatcgcaattctcagcctctttcctcacaacatccaaaacggaatcaatcaactcagcgccttcggtgtaatgacctttcgcccaatt 38178876  T
Q  276 attcccagcaccagactgaccga 298  Q
    ||| || ||||| ||||||||||    
T  38178877 atttccggcaccggactgaccga 38178899  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 40919556 - 40919664
Alignment:
Q  176 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 275  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||    
T  40919556 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 40919655  T
Q  276 attcccagc 284  Q
    ||| |||||    
T  40919656 attaccagc 40919664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 45319506 - 45319388
Alignment:
Q  175 ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaat 274  Q
    ||||||||||||||||||||||||||| | || || |  ||||||||||||||| | ||||| ||||| ||||| || || |||||||| || ||  |||    
T  45319506 ttaccttgcaagcaatcacaattctcaacctccttccttacaacatcaagaacaaagtcaatgagctcggcaccctcagtgtaatgacccttggcgaaat 45319407  T
Q  275 tattcccagcaccagactg 293  Q
    | || || |||||||||||    
T  45319406 tgtttccggcaccagactg 45319388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 34839953 - 34839842
Alignment:
Q  187 caatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcac 286  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||| || || || |    
T  34839953 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgacctttcgcccaattgttaccggcgc 34839854  T
Q  287 cagactgaccga 298  Q
    | ||||||||||    
T  34839853 cggactgaccga 34839842  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 45454432 - 45454538
Alignment:
Q  187 caatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcac 286  Q
    ||||||||||||||||| || || |  ||||||||||| || |||||||| | |||||| ||||| ||||| |||||||| ||||| || || || ||||    
T  45454432 caatcacaattctcagcctccttcctgacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcac 45454531  T
Q  287 cagactg 293  Q
    | |||||    
T  45454532 cggactg 45454538  T

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