View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_11 (Length: 307)
Name: NF10542_low_11
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_11 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 33807379 - 33807098
Alignment:
| Q |
17 |
gtaagcatctgattggtgttgtctgaaactaagtttggaattacttcttccataagcaagctatcctgcaaaacaatgttagtacaaaaaagagacttat |
116 |
Q |
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| T |
33807379 |
gtaagcatctgattggtgttgtctgaaactaagtttggaattacttcttccataagcaagctgtcctgcaaaacaatgttagtacaaaaaagagacttat |
33807280 |
T |
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| Q |
117 |
aaaaattaagggcatgattagcaatgagtatgggatcaatgatagtgtttccaccatctttgattgatgtaatgtgttttgtagtatttctaattttggt |
216 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33807279 |
aaaaattaagggcatgatcaacaatgagtatgggatcaatgatagtgtttcctccatctttgattgatgtaatgtgttttgtagtatttctaattttggc |
33807180 |
T |
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| Q |
217 |
gaccttatgaaaatatgatgtgttcctaccaccttctaaatgccacttcagtttagatttttcttgcaaaaatacttcttct |
298 |
Q |
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| T |
33807179 |
gaccttatgaaaatatgatgtgttcctaccaccttctaaatgccacttcagtttagatttttcttgccaaaatgcttcttct |
33807098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 17630648 - 17630693
Alignment:
| Q |
80 |
tcctgcaaaacaatgttagtacaaaaaagagacttataaaaattaa |
125 |
Q |
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| T |
17630648 |
tcctgcaaaacaaagttagtacaaaataaagacttataataattaa |
17630693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 43233385 - 43233139
Alignment:
| Q |
20 |
agcatctgattggtgttgtctgaaactaagtttggaattacttcttccataagcaagctatcctgcaaaacaatgttagtacaaaaaagagacttataaa |
119 |
Q |
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| T |
43233385 |
agcatctgattggtgttgtctatgactaattgaggaataacctcttcaaccagcaattgatcatgcaaaacaatgttagtgcaaaataaagatttataaa |
43233286 |
T |
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| Q |
120 |
aattaagggcatgattagcaatgagtatgggatcaatgatagtgtttccaccatctttgattgatgtaatgtgttttgtagtatttctaattttggtgac |
219 |
Q |
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| T |
43233285 |
agttaacggcatgattagcaataagattttgatcagtgataatattttcgccatctttgattgaagtgatgagattggtagtatgtctaatttttgtaac |
43233186 |
T |
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| Q |
220 |
cttatgaaaatatgatgtgttcctaccaccttctaaatgccacttca |
266 |
Q |
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| T |
43233185 |
cctacggaaataggcagtgtttctatcaccttctaaatgccacttca |
43233139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 279
Target Start/End: Original strand, 232414 - 232640
Alignment:
| Q |
53 |
ggaattacttcttccataagcaagctatcctgcaaaacaatgttagtacaaaaaagagacttataaaaattaagggcatgattagcaatgagtatgggat |
152 |
Q |
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| T |
232414 |
ggaattacttcatccacaagcaagctatcctgcaaaacaatgttagtgcaaaataaagatttaaaataattaacagcatgattagctatcagattttggt |
232513 |
T |
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| Q |
153 |
caatgatagtgtttccaccatctttgattgatgtaatgtgttttgtagtatttctaattttggtgaccttatgaaaatatgatgtgttcctaccaccttc |
252 |
Q |
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| T |
232514 |
tagtgagagtattatctccttctttaatggaagtaatcaatttggtggtattttttattttggtgatcctatgaaaatatgcagtgttcctgtcactttc |
232613 |
T |
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| Q |
253 |
taaatgccacttcagtttagatttttc |
279 |
Q |
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| T |
232614 |
taaatgccatttcactttggatttttc |
232640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 283
Target Start/End: Original strand, 42285 - 42509
Alignment:
| Q |
59 |
acttcttccataagcaagctatcctgcaaaacaatgttagtacaaaaaagagacttataaaaattaagggcatgattagcaatgagtatgggatcaatga |
158 |
Q |
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|||||||| | ||||||| ||||||||||||||||||||| ||||| | ||| ||| || |||| | ||||||||||||||||| ||||| ||| |
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| T |
42285 |
acttcttcaacaagcaagtgatcctgcaaaacaatgttagtgcaaaacaaagatttaaaataattgacagcatgattagcaatgagagactgatcagtga |
42384 |
T |
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| Q |
159 |
tagtgtttccaccatctttgattgatgtaatgtgttttgtagtatttctaattttggtgaccttatgaaaatatgatgtgttcctaccaccttctaaatg |
258 |
Q |
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| T |
42385 |
gagtaatatctccatccttgattgatgtgattattttggcggtatttttaattttggtgactctgtggaaatatgcagcgtttctatcaccttttaaatg |
42484 |
T |
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| Q |
259 |
ccacttcagtttagatttttcttgc |
283 |
Q |
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||| |||| ||| |||||||||||| |
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| T |
42485 |
ccatttcactttggatttttcttgc |
42509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 32019639 - 32019594
Alignment:
| Q |
80 |
tcctgcaaaacaatgttagtacaaaaaagagacttataaaaattaa |
125 |
Q |
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||||||||||||| |||||||||||| | |||||||||| |||||| |
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| T |
32019639 |
tcctgcaaaacaaagttagtacaaaataaagacttataataattaa |
32019594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 11179415 - 11179455
Alignment:
| Q |
224 |
tgaaaatatgatgtgttcctaccaccttctaaatgccactt |
264 |
Q |
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| T |
11179415 |
tgaaaatatgatgtgttcctatcaccttccacatgccactt |
11179455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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