View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_14 (Length: 283)
Name: NF10542_low_14
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 14536675 - 14536864
Alignment:
| Q |
4 |
ggagaagcagagagaacactatcagcttgaagaatcttgtggcgaaaagcttcaacaagaggtggataagttccttcattctcaagatcagtgttataca |
103 |
Q |
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| T |
14536675 |
ggagaagcaaaaagaacactatcagcttgaagaatcttgtggcgaaaagcttcaacaagaggtggataagttccttcattctcaagatcagtgttataca |
14536774 |
T |
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| Q |
104 |
taggtagagttgaaatatcaatgaactcaatctcaatgccttcaattgctcctttactcaactcaattgctgcaatcatcatcaaccatg |
193 |
Q |
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| T |
14536775 |
taggtagagttgaaatatcaatgaactcaatctcaatgccttcagttgctcctttactcaactcaattgctgcaatcatcatcaaccatg |
14536864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 5351625 - 5351490
Alignment:
| Q |
4 |
ggagaagcagagagaacactatcagcttgaagaatcttgtggcgaaaagcttcaacaagaggtggataagttccttcattctcaagatcagtgttataca |
103 |
Q |
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||||||||| |||||||||||||||| ||||||||| || |||||||||||||| || |||| || | ||||| |||| ||||||||||| ||| |
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| T |
5351625 |
ggagaagcaaagagaacactatcagcagcaagaatcttttgacgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaaca |
5351526 |
T |
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| Q |
104 |
taggtagagttgaaatatcaatgaactcaatctcaa |
139 |
Q |
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| T |
5351525 |
ttggtaaagttgaaatatcaatgtactcaatatcaa |
5351490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 5325495 - 5325589
Alignment:
| Q |
4 |
ggagaagcagagagaacactatcagcttgaagaatcttgtggcgaaaagcttcaacaagaggtggataagttccttcattctcaagatcagtgtt |
98 |
Q |
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||||||||| |||||||||||||||||| ||||||||| || ||||| |||||||| || ||| |||||||||| ||||||||||||||||| |
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| T |
5325495 |
ggagaagcaaagagaacactatcagcttcaagaatcttatgacgaaatgcttcaacttcagcaggaaaagttccttctttctcaagatcagtgtt |
5325589 |
T |
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