View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_16 (Length: 278)
Name: NF10542_low_16
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 10292622 - 10292430
Alignment:
| Q |
8 |
aagcaaagggagaaagaatgagaagggcaatgagatctctatagaagcagaagactaattgattgactccagaattgagggctactttagtaataacata |
107 |
Q |
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| T |
10292622 |
aagcaatgggagaaagaatgagaagggcaatgagatctctatagaagcagaagactaattgattgactccagaattgagggctactttagtaataacata |
10292523 |
T |
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| Q |
108 |
gtatccaccattgaaaagctgtacaactaccatacccagatgggccttcaaggtctcaccacccattgttgccatcacaactcacagctgctt |
200 |
Q |
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| T |
10292522 |
gtatccaccattgaaaagctgtacaactaccatacccagatgggccttcaaggtctcaccacccattgttgccatcacaactcacagctgctt |
10292430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 10301081 - 10300878
Alignment:
| Q |
8 |
aagcaaagggagaaagaatgagaagggcaatgagatctctatagaagcagaagactaattgattgactccagaattgagggctactttagtaataacata |
107 |
Q |
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| T |
10301081 |
aagcaatgggagaaataatgaggagggcaatgagatctctatagaagcagaagactaattggttgactccagcgttaagggccaccttagtaatgacatg |
10300982 |
T |
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| Q |
108 |
gtatccaccattgaaaagctgtacaactaccatacccagatgggcct---tcaaggtctcaccacccattgttgccatcacaactcacagctgcttcatt |
204 |
Q |
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| T |
10300981 |
gtatccaccattgaaaagctgtaagaatgccatggctagatgggccttcatcaaagtctcaccacccattgttgccattacaactcacaattgcttcaat |
10300882 |
T |
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| Q |
205 |
ttca |
208 |
Q |
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|||| |
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| T |
10300881 |
ttca |
10300878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 10284832 - 10284677
Alignment:
| Q |
34 |
gcaatgagatctctatagaagcagaagactaattgattgactccagaattgagggctactttagtaataacatagtatccaccattgaaaagctgtacaa |
133 |
Q |
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|||| |||||| ||||||||||||||||||||||| |||||||||| ||| ||||| || |||||||| |||| ||| ||||||||||| |||||||||| |
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| T |
10284832 |
gcaaggagatccctatagaagcagaagactaattggttgactccagcattaagggccaccttagtaatgacatggtagccaccattgaatagctgtacaa |
10284733 |
T |
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| Q |
134 |
ctaccatacccagatgggccttcaaggtctcaccacccattgttgccatcacaact |
189 |
Q |
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| T |
10284732 |
ctgccatgcccaaatgggccttccatgcttcacttcccattgttgccatcacaact |
10284677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 10283005 - 10283115
Alignment:
| Q |
8 |
aagcaaagggagaaagaatgagaagggcaatgagatctctatagaagcagaagactaattgattgactccagaattgagggctactttagtaataacata |
107 |
Q |
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|||||| |||||||| ||||| || |||| |||||||||||||||||||||||| | ||| ||||||||| ||| ||||| ||||| || || |||| |
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| T |
10283005 |
aagcaatgggagaaataatgaagagagcaaggagatctctatagaagcagaagacaagttggttgactccaacattaagggcaactttggtgatgacatg |
10283104 |
T |
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| Q |
108 |
gtatccaccat |
118 |
Q |
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||| ||||||| |
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| T |
10283105 |
gtagccaccat |
10283115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 10292416 - 10292383
Alignment:
| Q |
229 |
ggttcacaaaaataaaacaccaatcttatcttag |
262 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10292416 |
ggttcacaaaaataaaacaccaatcttatcttag |
10292383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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