View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_17 (Length: 276)
Name: NF10542_low_17
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 21592630 - 21592879
Alignment:
| Q |
16 |
atttcctcctcatctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgcgtgaagagccagaagcccgtattggaaaag |
115 |
Q |
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| T |
21592630 |
atttcctcctcatctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgtgtgaagagccagaagcccgtattggaaaag |
21592729 |
T |
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| Q |
116 |
gagacggagaaacatgatccaaaggagaaagtgaattaaaggacgaacaaggagtatgccatggagtttcttccctttgaggagcatcttcccattccca |
215 |
Q |
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| T |
21592730 |
gagacggagaaacatgatccaaaggagaaagtgaattaaaggacgaacaaggagtatgccatggagtttcttccctttgaggagcatcttcccattccca |
21592829 |
T |
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| Q |
216 |
tcggcgattgtgcaagtcatatctgttaggctttctccttgaaccttcat |
265 |
Q |
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| T |
21592830 |
tcggcgattgtgcaagtcatatctgttaggctttctccttgaaccttcat |
21592879 |
T |
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Back To:
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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 42095259 - 42095134
Alignment:
| Q |
28 |
tctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgcgtgaagagccagaagcccgtattggaaaaggagacggagaaa |
127 |
Q |
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||||||||||| || ||||||||| | |||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||| |
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| T |
42095259 |
tctgaagaaaaggcaagtttatgcgaccttcgattatatccagaaacagaagatttgactgaagagccggaagctcgtattggaacaggagacggagaaa |
42095160 |
T |
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| Q |
128 |
catgatccaaaggagaaagtgaatta |
153 |
Q |
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| T |
42095159 |
catggtcccaaggagaaggtgaatta |
42095134 |
T |
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