View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_20 (Length: 264)
Name: NF10542_low_20
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 42229031 - 42229277
Alignment:
| Q |
18 |
tgtacatgaaatcacacatgctagaccagttagttgacacgtgtcttctacgtaccttttaaactctctatttatagcttcacattgccaccttaagctc |
117 |
Q |
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| T |
42229031 |
tgtacatgaaatcacacatgctagaccagttagttgacacgtgtcttcaacgtaccttttaaactctctatttatagcttcacattgccaccttaagctc |
42229130 |
T |
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| Q |
118 |
acaaaacgaaagtgtttaaatcggtgcaaaagcaagcaattctctctgcattttcagtgtgttttttaagacaaaaagatttctacaaacttctgaagta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42229131 |
acaaaacgaaagtgtttaaatcggtgcaaaagcaagcaattctctctgcattttcagtgtgttttttaagacaaaaagatttctacaaacttctgaagta |
42229230 |
T |
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| Q |
218 |
tggcttctgtgggaagaaacgttctaggtccattgttgtttctgaac |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42229231 |
tggcttctgtgggaagaaacgttctaggtccattgttgtttctgaac |
42229277 |
T |
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