View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_21 (Length: 254)
Name: NF10542_low_21
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45587957 - 45587714
Alignment:
| Q |
1 |
agagcacttactttgtctaagtacttctgagcaaggagggggagatcagattttggtttcaagcctccaaatagtgatcccgtaatggttttgcctttca |
100 |
Q |
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| T |
45587957 |
agagcacttactttgtctaagtacttctgagcaaggagggggagatcagattttggtttcaagcctccaaatagtgatcccgtaatggttttgcctttta |
45587858 |
T |
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| Q |
101 |
aaatgtcataaggatttaaagtcaatggcgaaccgtgcatttccaccccaattatcaccgttttcccccaaccctaatcaaagtataccagcaattaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
45587857 |
aaatgtcataaggatttaaagtcaatggcgaaccgtgcatttccaccccaattatcaccgttttcccccaaccctaatcaaagtataccaaccattaatt |
45587758 |
T |
|
| Q |
201 |
agttaatg-----ttattcggttttttaaatgatttattaattg |
239 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |
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| T |
45587757 |
agttaatgttatgttattcggttttttaaatgatttattaattg |
45587714 |
T |
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