View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10542_low_24 (Length: 240)

Name: NF10542_low_24
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10542_low_24
NF10542_low_24
[»] chr8 (2 HSPs)
chr8 (74-240)||(1361563-1361732)
chr8 (17-54)||(1361753-1361790)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 74 - 240
Target Start/End: Complemental strand, 1361732 - 1361563
Alignment:
Q  74 ctcaattttgaacggaaatcaccaaagtttaaaagaaatatcaacctgcataatagtaacacggttattcacatttccaacaca------aaaagtaaaa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||    
T  1361732 ctcaattttgaacggaaatcaccaaagtttaaaagaaatatcaacctgcataatagtaacacggttattcacatttccaacacaaaaaccaaaagtaaaa 1361633  T
Q  168 atattcacatttctgcaacataatagtaagatattgaatatggcatgccaataaaatatttccatgtaattat 240  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1361632 atattcacatttctg---cataatagtaagatattgaatatggcatgccaataaaatatttccatgtaattat 1361563  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 1361790 - 1361753
Alignment:
Q  17 aatgttgcatctaaatatttgttttaaattttctgaag 54  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1361790 aatgttgcatctaaatatttgttttaaattttctgaag 1361753  T

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