View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_25 (Length: 239)
Name: NF10542_low_25
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48593308 - 48593086
Alignment:
| Q |
1 |
tttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcggaatcatgttaccatcaaccacacaatcttccattcccttcctcataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593308 |
tttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcagaatcatgttaccatcaaccacacaatcttccattcccttcctcataa |
48593209 |
T |
|
| Q |
101 |
tcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctttct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593208 |
tcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctttct |
48593109 |
T |
|
| Q |
201 |
agtaactatatccacctcctctt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
48593108 |
agtaactatatccacctcctctt |
48593086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48597919 - 48597697
Alignment:
| Q |
1 |
tttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcggaatcatgttaccatcaaccacacaatcttccattcccttcctcataa |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597919 |
tttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcagaatcatgttaccatcaaccacacaatcttccattcccttcctcataa |
48597820 |
T |
|
| Q |
101 |
tcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597819 |
tcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctttct |
48597720 |
T |
|
| Q |
201 |
agtaactatatccacctcctctt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
48597719 |
agtaactatatccacctcctctt |
48597697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 23230954 - 23231148
Alignment:
| Q |
5 |
ggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcggaatcatgttaccatcaaccacacaatcttccattcccttcctcataatcat |
104 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||||||| ||||| |||| ||| ||||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
23230954 |
ggtctcttcccatagcccaaatgttcacacaaaccattgatccttttggaaccattttaccatcaacaacacaatcttccattcctttcctcataatcat |
23231053 |
T |
|
| Q |
105 |
cggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctttc |
199 |
Q |
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||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
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|
| T |
23231054 |
cggtatcggagggtgaagcctcatggtttcttttatgatggcatgtatataaggaaggtttggactgtcttcttcacacactaatctttcctttc |
23231148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 23223205 - 23223401
Alignment:
| Q |
1 |
tttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcggaatcatgttaccatcaaccacacaatcttccattcccttcctcataa |
100 |
Q |
| |
|
|||| ||||||| | |||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||||||||||| |||| ||||| || |
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| T |
23223205 |
tttgagtcccttccaatagcccaaatgttcacacaaactattgagccttttttgatcattttcccatcgaccacacaatcttttgttcctttcctagcaa |
23223304 |
T |
|
| Q |
101 |
tcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctt |
197 |
Q |
| |
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||||||||| || || |||||||||| |||||||||||| || || ||||||||||||||||||||| |||| ||||||| || ||||||||||| |
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| T |
23223305 |
tcatcggtagtggtgggtgaagcctcaatgtttcttttataatggcttgtatataaggaaggtttggaatgtctgcttcacatactagtctttcctt |
23223401 |
T |
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