View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10542_low_26 (Length: 239)
Name: NF10542_low_26
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 41886018 - 41885806
Alignment:
| Q |
9 |
gaagcagagaaggaaagttgcagtgatggaaatatcagaatcaaagactctgaagctgatcatgttgaccatgatgatcacaaacaagaattgagtcttt |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41886018 |
gaagcaaagaaggaaagttgcagtgatggaaatatcagaatcaaagactctgaagctgatc-tattgaccatgatgatcacaaacaagaattgagtcttt |
41885920 |
T |
|
| Q |
109 |
ctcttgagaagctgaatcttgcaccaaagaagaagaagttgcttgttttgaaccttaatggtttacttctccaccgatctatccacacttcccgtctcac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41885919 |
ctcttgagaagctgaatcttgcaccaaagaagaagaagttgcttgttttgaaccttaatggtttacttctccaccgatctatccacacttcccgtctcac |
41885820 |
T |
|
| Q |
209 |
cgatcatggatatt |
222 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41885819 |
cgatcatggatatt |
41885806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 41828705 - 41828908
Alignment:
| Q |
9 |
gaagcagagaaggaaagttgcagtgatggaaatatcagaatcaaagactctgaagctgatcatgttgaccatgatgatcacaaacaagaattgagtcttt |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41828705 |
gaagcaaagaaggaaagttgcagtgatggaaatatcagaatcaaagactttgaagctgatcatgttgaccatgatgatcacaaacaagaattgagtcttt |
41828804 |
T |
|
| Q |
109 |
ctcttgagaagctgaatcttgcaccaaagaagaagaagttgcttgttttgaaccttaatggtttacttctccaccgatctatccacacttcccgtctcac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41828805 |
ctcttgagaagctgaatcttgcaccaaagaagaagaagttgcttgttttgaaccttaatggtttacttctccaccgatctatccacacttcccgtctcac |
41828904 |
T |
|
| Q |
209 |
cgat |
212 |
Q |
| |
|
|||| |
|
|
| T |
41828905 |
cgat |
41828908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 41893802 - 41893734
Alignment:
| Q |
24 |
agttgcagtgatggaaatatcagaatcaaagactctgaagctgatcatgttgaccatgatgatcacaaa |
92 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
41893802 |
agttgcagtgacggaaatatcaaaatcaaagactctgaagctaatcatgttgaccttgatgatcacaaa |
41893734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 34453490 - 34453577
Alignment:
| Q |
132 |
ccaaagaagaagaagttgcttgttttgaaccttaatggtttacttctccaccgatctatccacacttcccgtctcaccgatcatggat |
219 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||||| |||| |||| ||||| |||| |
|
|
| T |
34453490 |
ccaaagaagaagaagttgcttgtattgaacctgaatggttttctgctccaccgatctattcacactttccgtttcacagatcagggat |
34453577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 41896975 - 41896912
Alignment:
| Q |
9 |
gaagcagagaaggaaagttgcagtgatggaaatatcagaatcaaagactctgaagctgatcatg |
72 |
Q |
| |
|
|||||| |||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41896975 |
gaagcaaagaaagagagttgcagtgatggaaatatcaaaatcaaagactctgaagctgatcatg |
41896912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 41902011 - 41901962
Alignment:
| Q |
24 |
agttgcagtgatggaaatatcagaatcaaagactc-tgaagctgatcatg |
72 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
41902011 |
agttccagtgatggaaatatcaaaatcaaagactcttgaagctgatcatg |
41901962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University