View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_27 (Length: 239)
Name: NF10542_low_27
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 3007890 - 3008097
Alignment:
| Q |
14 |
caaaggtcttattagctgtgtgacaggaaaaggttctgagatcggcgactttcttacaatgcatccaggggtgaactgcataaggtaatatccacttctt |
113 |
Q |
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| T |
3007890 |
caaaggtcttattagctgtgtgacaggaaaaggttctgagatcggcgactttcttacaatgcatccaggggtgaactgcataaggtaatatccacttctt |
3007989 |
T |
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| Q |
114 |
cagctatcttgttagcattactgtccaattttgtgtttggttttattatacaaaaatgtatagagtaaaccgcgtcattttggtccctaaagtgtgtgag |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3007990 |
cagctatcttgttaacattactgtccaattttgtgtttggttttattatacaaaaatgtatagagtaaaccgcgtcattttggtccctaaagtgtgtgag |
3008089 |
T |
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| Q |
214 |
gcagtgtc |
221 |
Q |
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|||||||| |
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| T |
3008090 |
gcagtgtc |
3008097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 54726374 - 54726289
Alignment:
| Q |
14 |
caaaggtcttattagctgtgtgacaggaaaaggttctgagatcggcgactttcttacaatgcatccaggggtgaactgcataaggt |
99 |
Q |
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||||||||| || |||||||| || || ||||| || || || || ||||| ||||||||||||||||| |||||||| ||||||| |
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| T |
54726374 |
caaaggtctaatcagctgtgttactggcaaaggctcagaaattggtgacttccttacaatgcatccaggagtgaactgtataaggt |
54726289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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