View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10542_low_29 (Length: 227)

Name: NF10542_low_29
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10542_low_29
NF10542_low_29
[»] chr7 (1 HSPs)
chr7 (17-208)||(6572747-6572938)
[»] chr3 (25 HSPs)
chr3 (25-181)||(8471977-8472133)
chr3 (17-209)||(6838350-6838542)
chr3 (84-208)||(8568464-8568588)
chr3 (28-209)||(4388397-4388578)
chr3 (56-208)||(5250558-5250710)
chr3 (74-208)||(6519668-6519802)
chr3 (74-208)||(6553944-6554078)
chr3 (74-208)||(6947658-6947792)
chr3 (74-208)||(8455043-8455177)
chr3 (74-208)||(6448288-6448422)
chr3 (78-208)||(6736379-6736509)
chr3 (74-208)||(6479488-6479622)
chr3 (74-208)||(8590118-8590252)
chr3 (25-181)||(5268472-5268628)
chr3 (74-209)||(5299119-5299254)
chr3 (74-200)||(6721569-6721695)
chr3 (81-203)||(6590841-6590963)
chr3 (74-203)||(5281078-5281207)
chr3 (74-203)||(7750421-7750550)
chr3 (74-195)||(13270094-13270215)
chr3 (74-181)||(6259598-6259705)
chr3 (24-203)||(6900510-6900689)
chr3 (111-205)||(6917518-6917612)
chr3 (95-203)||(6142705-6142813)
chr3 (74-194)||(6266122-6266242)
[»] scaffold0425 (1 HSPs)
scaffold0425 (74-208)||(6983-7117)
[»] chr1 (1 HSPs)
chr1 (120-197)||(35139940-35140017)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 6572747 - 6572938
Alignment:
Q  17 agaagagataatcaactatttgctgtcagacaaggacaatggcaagcaagtatcaacaatcagcatagtgggtttgggtgggatggggaagaccaccctt 116  Q
    |||||| ||||||||| ||||||| ||| |||| ||||| | ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6572747 agaagaaataatcaaccatttgctttcatacaaagacaacgacaaccaagtatcaataatcagcatagtgggtttgggtgggatggggaagaccaccctt 6572846  T
Q  117 gctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatgtctcaaaatcttttgatgttgttggact 208  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  6572847 gctcagcttgtctacaatgaccagaggatggagaaacagtttgaccttaaagcttgggtccatgtctcaaaatcatttgatgctgttggact 6572938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 8472133 - 8471977
Alignment:
Q  25 taatcaactatttgctgtcagacaaggacaatggcaagcaagtatcaacaatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaact 124  Q
    ||||||| |||||||| ||  |||| ||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||| ||    
T  8472133 taatcaagtatttgctttcttacaacgacaatggcaaccaagtatcaactatcagcatagtgggtttgcctgggatggggaagaccacccttgctcagct 8472034  T
Q  125 tgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatgt 181  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  8472033 tgtctacaatgaccagaggatggacaagcagtttgaacttaaagtttgggtccatgt 8471977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 6838350 - 6838542
Alignment:
Q  17 agaagagataatcaactatttgctgtcagacaaggacaatggcaagcaagtatcaacaatcagcatagtgggtttgggtgggatggggaagaccaccctt 116  Q
    |||||| ||||| ||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  6838350 agaagaaataattaactatttgctgtcttacaaggacaatggcaaccaagtatcaactatcagcatagttggtttgggtgggatgggaaagaccaccctt 6838449  T
Q  117 gctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatgtctcaaaatcttttgatgttgttggactt 209  Q
    ||||| ||||||||||||||    || ||  |  || | |||||  ||||||||||||||||||| || || | |||||||||| ||||||||    
T  6838450 gctcagcttgtctacaatgattgcagaatacaagagaagtttgagattaaagcttgggtccatgtatctaagtattttgatgttattggactt 6838542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 8568464 - 8568588
Alignment:
Q  84 gtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatgtct 183  Q
    |||||| | ||||||||||| |||||||||||||||| |||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||| |    
T  8568464 gtgggtctaggtgggatgggtaagaccacccttgctcgacttgtctacaatgaccacaagatagagaagcaatttgaacttaaagcttgggtccatgttt 8568563  T
Q  184 caaaatcttttgatgttgttggact 208  Q
    || ||||||||||||||||||||||    
T  8568564 cagaatcttttgatgttgttggact 8568588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 4388397 - 4388578
Alignment:
Q  28 tcaactatttgctgtcagacaaggacaatggcaagcaagtatcaacaatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgt 127  Q
    |||||| ||| ||||| ||||  ||||  ||||| |||||| ||| |||||||||||||||| | ||||| ||||| |||||||| |||||||| |||||    
T  4388397 tcaactttttactgtctgacatagacagcggcaaccaagtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgt 4388496  T
Q  128 ctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatgtctcaaaatcttttgatgttgttggactt 209  Q
     ||||||||||  |||||| |  |||||||||||||||||||||||||| | || ||| || ||||||||||||||||||||    
T  4388497 gtacaatgaccgcaggatgaaagagcattttgaacttaaagcttgggtctacgtttcagaaacttttgatgttgttggactt 4388578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 208
Target Start/End: Complemental strand, 5250710 - 5250558
Alignment:
Q  56 tggcaagcaagtatcaacaatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcat 155  Q
    |||||| || ||| ||| |||||||||||||||| | ||||| ||||| |||||||| |||||||| ||||  ||||| ||||| |||||| || |||||    
T  5250710 tggcaatcatgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgcgtacaacgaccacaggatgcaggagcat 5250611  T
Q  156 tttgaacttaaagcttgggtccatgtctcaaaatcttttgatgttgttggact 208  Q
    ||||||||||||||||||||| |||| ||| || |||||||||||||||||||    
T  5250610 tttgaacttaaagcttgggtctatgtttcagaaacttttgatgttgttggact 5250558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 6519668 - 6519802
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||||||||||||||| || || ||||| || |||||||||||||||| ||||||||||||| | | ||   |||||||||||||||||||||| |||    
T  6519668 aatcagcatagtgggtttaggaggaatgggtaaaaccacccttgctcaacatgtctacaatgacaacatgacaaagaagcattttgaacttaaagcatgg 6519767  T
Q  174 gtccatgtctcaaaatcttttgatgttgttggact 208  Q
    ||| |||| ||| |||||||||||| |||||||||    
T  6519768 gtctatgtttcagaatcttttgatgatgttggact 6519802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 6553944 - 6554078
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||||||||||||||| || ||||||||||| |||||||||||| | ||||| ||||| ||| | | |||  |||||||||||||||||||||| |||    
T  6553944 aatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcattttgaacttaaagcatgg 6554043  T
Q  174 gtccatgtctcaaaatcttttgatgttgttggact 208  Q
    ||| |||| ||| ||||||| |||||| |||||||    
T  6554044 gtctatgtttcagaatctttcgatgtttttggact 6554078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 6947792 - 6947658
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||||||||||||||| || ||||||||||| |||||||||||| | ||||| ||||||||| | | ||| ||| |||||||||| |||||| | |||    
T  6947792 aatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaatgacaacaagatagaggagcattttgaccttaaaacatgg 6947693  T
Q  174 gtccatgtctcaaaatcttttgatgttgttggact 208  Q
    ||| | || ||| ||||||||||||||||||||||    
T  6947692 gtctacgtttcagaatcttttgatgttgttggact 6947658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 8455177 - 8455043
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||||||||| ||||| || |||||||| || |||||||||||| | ||||| ||||||||| | | |||  || ||||||||||||||||||| |||    
T  8455177 aatcagcatagtcggtttaggagggatgggtaaaaccacccttgctaagcttgtgtacaatgacaacaagataaaggagcattttgaacttaaagcatgg 8455078  T
Q  174 gtccatgtctcaaaatcttttgatgttgttggact 208  Q
    ||| |||| ||| ||||||||||||||||||||||    
T  8455077 gtctatgtttcagaatcttttgatgttgttggact 8455043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 6448288 - 6448422
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||||||||||||| ||||||||||||| ||||||||  ||||| | ||||| |||||| || | | |||  || ||||||||||||||||| |||||    
T  6448288 aatcagcatagtgggtctgggtgggatgggtaagaccacttttgctaagcttgtgtacaatcacaacatgataaaggagcattttgaacttaaatcttgg 6448387  T
Q  174 gtccatgtctcaaaatcttttgatgttgttggact 208  Q
    ||| |||| ||| ||| ||||||||||||||||||    
T  6448388 gtctatgtttcagaatattttgatgttgttggact 6448422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 6736509 - 6736379
Alignment:
Q  78 agcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtcc 177  Q
    |||||||||||||| || ||||||||||| |||||||||||| | ||||| ||||| ||| | | |||  |||||||||||||||||||||| ||||||     
T  6736509 agcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcattttgaacttaaagcatgggtct 6736410  T
Q  178 atgtctcaaaatcttttgatgttgttggact 208  Q
    |||| ||| ||||||| |||||| |||||||    
T  6736409 atgtttcagaatctttcgatgtttttggact 6736379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 6479488 - 6479622
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||||||||| ||||| || ||||||||||| |||||||||||| | ||||| |||||  || | | ||| ||| | ||||||||||||||||| |||    
T  6479488 aatcagcatagttggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacaacaacaagatagaggaacattttgaacttaaagcatgg 6479587  T
Q  174 gtccatgtctcaaaatcttttgatgttgttggact 208  Q
    ||| |||| ||| |||||| |||||||||||||||    
T  6479588 gtctatgtttcagaatcttatgatgttgttggact 6479622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 8590252 - 8590118
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||||||||| ||||| || ||||||||||| |||||||||||| | ||||| ||||| ||| | | ||| ||  |||||||||| |||||||| |||    
T  8590252 aatcagcatagtcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcatgg 8590153  T
Q  174 gtccatgtctcaaaatcttttgatgttgttggact 208  Q
    ||| |||| ||  ||||||||||||||||||||||    
T  8590152 gtctatgtttctgaatcttttgatgttgttggact 8590118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 5268628 - 5268472
Alignment:
Q  25 taatcaactatttgctgtcagacaaggacaatggcaagcaagtatcaacaatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaact 124  Q
    ||||||| | ||| ||||| ||||  ||||| ||||| || ||| ||| |||||||||||||||| | ||||| ||||| ||||||||||||||||||||    
T  5268628 taatcaattttttactgtctgacatagacaagggcaaccatgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccacccttgctcaact 5268529  T
Q  125 tgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatgt 181  Q
     || ||||||||||| |||||  || || ||||| ||| |||||| |||||| ||||    
T  5268528 cgtgtacaatgaccaaaggatcaaggagaattttaaacataaagcctgggtctatgt 5268472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 5299254 - 5299119
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||||||||||||| | ||||| ||||| || |||||||||||||||||||| |||||| || | | |||  |||| || |||||||| ||||| |||    
T  5299254 aatcagcatagtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatacagaaacagtttgaactaaaagcctgg 5299155  T
Q  174 gtccatgtctcaaaatcttttgatgttgttggactt 209  Q
    ||| |||| ||  || ||||| ||||||||||||||    
T  5299154 gtctatgtttcggaaacttttaatgttgttggactt 5299119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 6721569 - 6721695
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||| ||||||||| ||  |||||| || ||||| |||||||| || ||||| ||||||||||| ||||| | | |||| | ||||||||||||||||    
T  6721569 aatcagtatagtgggtctgattgggataggtaagacaacccttgcccagcttgtttacaatgaccacaggatagtggagcaatatgaacttaaagcttgg 6721668  T
Q  174 gtccatgtctcaaaatcttttgatgtt 200  Q
    ||| || | ||| ||||||||||||||    
T  6721669 gtctatctttcagaatcttttgatgtt 6721695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 6590841 - 6590963
Alignment:
Q  81 atagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatg 180  Q
    ||||||||| ||  ||||||||| ||||| |||||||| |  ||||| ||||| ||||| | |||   | |||| ||||||||||||||||||||| |||    
T  6590841 atagtgggtatgattgggatgggtaagacaacccttgcccggcttgtttacaaggaccacaagatactggagcaatttgaacttaaagcttgggtctatg 6590940  T
Q  181 tctcaaaatcttttgatgttgtt 203  Q
    | ||||||||||||||| |||||    
T  6590941 tttcaaaatcttttgatcttgtt 6590963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 5281207 - 5281078
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    ||||| |||||||||||  ||||||||||| ||||||||||||||| | ||||| || || ||| | || ||  |  |||||||||||| ||||||||||    
T  5281207 aatcaccatagtgggttctggtgggatgggtaagaccacccttgctgagcttgtgtataacgacgatagaattaaagagcattttgaacataaagcttgg 5281108  T
Q  174 gtccatgtctcaaaatcttttgatgttgtt 203  Q
    ||| |||| ||| ||| |||||||| ||||    
T  5281107 gtctatgtttcagaattttttgatgctgtt 5281078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 7750550 - 7750421
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||| ||||||||| ||  ||||||||| ||||| ||| |||| | |||||| ||||| ||||| | |||  |  |||| ||||||||||||||||||    
T  7750550 aatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacgaccacaagatacatgagcaatttgaacttaaagcttgg 7750451  T
Q  174 gtccatgtctcaaaatcttttgatgttgtt 203  Q
    ||| |||| ||| ||||||||||| |||||    
T  7750450 gtctatgtttcagaatcttttgatcttgtt 7750421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 13270094 - 13270215
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||| ||||||||| ||   |||||||| |||||  |||||||||| ||||| ||||||||||| |||||  || |||| |||||| |||||||||||    
T  13270094 aatcagtatagtgggtctgatggggatgggtaagacagcccttgctcagcttgtttacaatgaccataggatacaggagcagtttgaatttaaagcttgg 13270193  T
Q  174 gtccatgtctcaaaatcttttg 195  Q
    ||| ||||  || |||||||||    
T  13270194 gtctatgttccagaatcttttg 13270215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 6259705 - 6259598
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||| ||||||||| ||   |||||||| |||||  ||||||| || ||||| ||||||||||| |||||  || |||| |||||| |||||||||||    
T  6259705 aatcagtatagtgggtctgacggggatgggtaagacagcccttgcccagcttgtttacaatgaccataggatacaggagcagtttgaatttaaagcttgg 6259606  T
Q  174 gtccatgt 181  Q
    ||||||||    
T  6259605 gtccatgt 6259598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 6900689 - 6900510
Alignment:
Q  24 ataatcaactatttgctgtcagacaaggacaatggcaagcaagtatcaacaatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaac 123  Q
    |||||| ||||||| || || ||||  |||| | |||| |||||| | | ||||||  |||||||| ||  ||||||||| ||||| ||||| || || |    
T  6900689 ataatcgactatttactttccgacagtgacagtcgcaaccaagtacccataatcagtgtagtgggtgtgattgggatgggtaagacaaccctcgcccagc 6900590  T
Q  124 ttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatgtctcaaaatcttttgatgttgtt 203  Q
    |||| ||| ||||| | | ||| | | ||||||||||| ||||||||||||||||||| ||  ||||||||||| |||||    
T  6900589 ttgtttactatgacgacatgatcgtggagcattttgaaattaaagcttgggtccatgtttcggaatcttttgatcttgtt 6900510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 6917612 - 6917518
Alignment:
Q  111 acccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatgtctcaaaatcttttgatgttgttgg 205  Q
    |||||||| |||||||| |||||||| || | ||||  | ||||| | ||||||||||||||||||||||  ||| ||||||||||| |||||||    
T  6917612 acccttgcgcaacttgtttacaatgatcataagatgatggagcatgtggaacttaaagcttgggtccatgattcagaatcttttgatcttgttgg 6917518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 6142813 - 6142705
Alignment:
Q  95 tgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatgtctcaaaatctttt 194  Q
    |||||| || ||||| |||||||| ||  || | ||||||||||| |||||  || |||| ||||||||||| ||||||||||||||  ||| |||||||    
T  6142813 tgggataggtaagacaacccttgcgcagtttatttacaatgaccacaggatacaggagcaatttgaacttaatgcttgggtccatgttccaagatctttt 6142714  T
Q  195 gatgttgtt 203  Q
    ||| |||||    
T  6142713 gatcttgtt 6142705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 6266242 - 6266122
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||| ||||||||| ||   ||||| || |||||  ||||||| || ||||| ||||||||||| |||||  || |||| |||||| |||||||||||    
T  6266242 aatcagtatagtgggtctgacggggattggtaagacagcccttgcccagcttgtttacaatgaccataggatacaggagcagtttgaatttaaagcttgg 6266143  T
Q  174 gtccatgtctcaaaatctttt 194  Q
    |||||||| ||| || |||||    
T  6266142 gtccatgtttcagaaactttt 6266122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 6983 - 7117
Alignment:
Q  74 aatcagcatagtgggtttgggtgggatggggaagaccacccttgctcaacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgg 173  Q
    |||||||||||||||||| || ||||||||||| |||||||||||| | ||||| ||||| ||| | | |||  |||||||||||||||||||||| |||    
T  6983 aatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaaagacaacaagataaagaagcattttgaacttaaagcatgg 7082  T
Q  174 gtccatgtctcaaaatcttttgatgttgttggact 208  Q
    ||| |||| ||| ||||||| |||||| |||||||    
T  7083 gtctatgtttcagaatctttcgatgtttttggact 7117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 35139940 - 35140017
Alignment:
Q  120 caacttgtctacaatgaccagaggatggagaagcattttgaacttaaagcttgggtccatgtctcaaaatcttttgat 197  Q
    |||||||| ||||||||||| |||||  |  |||| |||||| ||||||||||||||||||| ||  |||||||||||    
T  35139940 caacttgtttacaatgaccataggatacatgagcagtttgaatttaaagcttgggtccatgtttctgaatcttttgat 35140017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University