View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_3 (Length: 463)
Name: NF10542_low_3
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 31276032 - 31276308
Alignment:
| Q |
11 |
caaagggagtgagtgctgtggttagataaccattagtaacatactcatttgaccaactacttggtcttgatgcaaaaattgcatcttgttttatacacaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31276032 |
caaagggagtgagtgctgtggttagataaccattagtaacatactcatttgaccaactacttggtcttgatgcaaaaattgcatcttgttttatacacaa |
31276131 |
T |
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| Q |
111 |
ttcacgtgcaatttcaggatcgctaattgtaatcacatgaacgttacctaatcggatgcaagcaatatctgtgttgagatcattcatcattttttgtatc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31276132 |
ttcacgtgcaatttcaggatcgctaattgtaatcacatgaacgttacctaaacggatgcaagcaatatctgtgttgagatcattcatcattttttgtatc |
31276231 |
T |
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| Q |
211 |
catctaaatgttggcctatttgcaagcatttcagggaggttgcctactataggccaaggtgttggaccaggagggag |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31276232 |
catctaaatgttggcctatttgcaagcatttcagggaggttgcctactataggccaaggtgttggaccaggagggag |
31276308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 32347352 - 32347628
Alignment:
| Q |
11 |
caaagggagtgagtgctgtggttagataaccattagtaacatactcatttgaccaactacttggtcttgatgcaaaaattgcatcttgttttatacacaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32347352 |
caaagggagtgagtgctgtggttagataaccattagtaacatactcatttgaccaactacttggtcttgatgcaaaaattgcatcttgttttatacacaa |
32347451 |
T |
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| Q |
111 |
ttcacgtgcaatttcaggatcgctaattgtaatcacatgaacgttacctaatcggatgcaagcaatatctgtgttgagatcattcatcattttttgtatc |
210 |
Q |
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| T |
32347452 |
ttcacgtgcaatttcaggatcgctaattgtaatcacatgaacgttacctaaacggatgcaagcaatatctgtgttgagatcattcatcattttttgtatc |
32347551 |
T |
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| Q |
211 |
catctaaatgttggcctatttgcaagcatttcagggaggttgcctactataggccaaggtgttggaccaggagggag |
287 |
Q |
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| T |
32347552 |
catctaaatgttggcctatttgcaagcatttcaggaaggttgcctactataggccaaggtgttggaccaggagggag |
32347628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 32364014 - 32364290
Alignment:
| Q |
11 |
caaagggagtgagtgctgtggttagataaccattagtaacatactcatttgaccaactacttggtcttgatgcaaaaattgcatcttgttttatacacaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32364014 |
caaagggagtgagtgctgtggttagataaccattagtaacatactcatttgaccaactacttggtcttgatgcaaaaattgcatcttgttttatacacaa |
32364113 |
T |
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| Q |
111 |
ttcacgtgcaatttcaggatcgctaattgtaatcacatgaacgttacctaatcggatgcaagcaatatctgtgttgagatcattcatcattttttgtatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32364114 |
ttcacgtgcaatttcaggatcgctaattgtaatcacgtgaacgttacctaaacggatgcaagcaatatctgtgttgagatcattcatcattttttgtatc |
32364213 |
T |
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| Q |
211 |
catctaaatgttggcctatttgcaagcatttcagggaggttgcctactataggccaaggtgttggaccaggagggag |
287 |
Q |
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| T |
32364214 |
catctaaatgttggcctatttgcaagcatttcaggaaggttgcctactataggccaaggtgttggaccaggagggag |
32364290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 31270260 - 31270536
Alignment:
| Q |
11 |
caaagggagtgagtgctgtggttagataaccattagtaacatactcatttgaccaactacttggtcttgatgcaaaaattgcatcttgttttatacacaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31270260 |
caaagggagtgagtgctgtggttagataaccattagtaacatactcatttgaccaactacttggtcttgatgcaaaaattgcatcttgttttatacataa |
31270359 |
T |
|
| Q |
111 |
ttcacgtgcaatttcaggatcgctaattgtaatcacatgaacgttacctaatcggatgcaagcaatatctgtgttgagatcattcatcattttttgtatc |
210 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31270360 |
ttcacgcgcaatttcaggatcactaattgtaatcacatgaacgttacctaaacggatgcaagcaatatctgtgttgagatcattcatcattttttgtatc |
31270459 |
T |
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| Q |
211 |
catctaaatgttggcctatttgcaagcatttcagggaggttgcctactataggccaaggtgttggaccaggagggag |
287 |
Q |
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| T |
31270460 |
catctaaatgttggcctatttgcaagcatttcagggaggttgcctactataggccaaggtgttggaccaggagggag |
31270536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 317 - 447
Target Start/End: Original strand, 31276338 - 31276468
Alignment:
| Q |
317 |
tactacgttggtgtttgatgaggagtttatagacaagtaacatgagtatgagataccataatgttgttgacaattggtaggaaacaacaaaatattccat |
416 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
31276338 |
tactacgttggtgtttgacgaggagtttatagacaagtaacatgagtatgagataccataatgttgttgacaattggtcggaaacaacaaaatagtccat |
31276437 |
T |
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| Q |
417 |
gagactttgtaattattttgttcaagctgat |
447 |
Q |
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| T |
31276438 |
gagactttgtaattattttgttcaagctgat |
31276468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 314 - 447
Target Start/End: Original strand, 32347655 - 32347788
Alignment:
| Q |
314 |
gggtactacgttggtgtttgatgaggagtttatagacaagtaacatgagtatgagataccataatgttgttgacaattggtaggaaacaacaaaatattc |
413 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
32347655 |
gggtactacgttggtgtttgatgaggaatttatagacaagtaacatgagtatgagataccataatgttgttgacaattggtcagaaacaactaaatattc |
32347754 |
T |
|
| Q |
414 |
catgagactttgtaattattttgttcaagctgat |
447 |
Q |
| |
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||||| ||||||||||||||||||| |||||||| |
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| T |
32347755 |
catgatactttgtaattattttgtttaagctgat |
32347788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 314 - 447
Target Start/End: Original strand, 32364317 - 32364450
Alignment:
| Q |
314 |
gggtactacgttggtgtttgatgaggagtttatagacaagtaacatgagtatgagataccataatgttgttgacaattggtaggaaacaacaaaatattc |
413 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
32364317 |
gggtactacgttggtgtttgatgaggaatttatagacaagtaacatgagtatgagataccataatgttgttgacaattggtcagaaacaactaaatattc |
32364416 |
T |
|
| Q |
414 |
catgagactttgtaattattttgttcaagctgat |
447 |
Q |
| |
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||||| ||||||||||||||||||| |||||||| |
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| T |
32364417 |
catgatactttgtaattattttgtttaagctgat |
32364450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 439
Target Start/End: Original strand, 31270581 - 31270676
Alignment:
| Q |
344 |
tatagacaagtaacatgagtatgagataccataatgttgttgacaattggtaggaaacaacaaaatattccatgagactttgtaattattttgttc |
439 |
Q |
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|||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||| |
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| T |
31270581 |
tatagacaagtaacataagtatgagacaccataatgatgttgacaattggtcaataacaataaaatattccatgagacttagtaatttgtttgttc |
31270676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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