View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10542_low_30 (Length: 227)

Name: NF10542_low_30
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10542_low_30
NF10542_low_30
[»] chr8 (2 HSPs)
chr8 (62-227)||(43980742-43980907)
chr8 (1-38)||(43980923-43980960)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 43980907 - 43980742
Alignment:
Q  62 actagaactatagcgcgagtgcgagggagggacaaatttatatacatatgggtcccattgccacgtggctcattttgccacgttggatcataaggtcttt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43980907 actagaactatagcgcgagtgcgagggagggacaaatttatatacatatgggtcccattgccacgtggctcattttgccacgttggatcataaggtcttt 43980808  T
Q  162 tgctgttatataaacgaccatagtttcatcatctctccctttcactttcctgcccaattaatgcac 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43980807 tgctgttatataaacgaccatagtttcatcatctctccctttcactttcctgcccaattaatgcac 43980742  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43980960 - 43980923
Alignment:
Q  1 aaagatgtgtttggttttggttacaaagccgataagaa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43980960 aaagatgtgtttggttttggttacaaagccgataagaa 43980923  T

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