View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10542_low_34 (Length: 219)
Name: NF10542_low_34
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_34 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 5250593 - 5250792
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250593 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
5250692 |
T |
|
| Q |
101 |
attggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaag |
200 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5250693 |
attggtacatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccatctctaccatatatgctcgattcatccaccaaag |
5250792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 4388542 - 4388340
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388542 |
ccaagctttaagttcaaaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
4388443 |
T |
|
| Q |
101 |
attggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaag |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||| | |||||||||||||||| || |||||||||||| |
|
|
| T |
4388442 |
attggtacttggttgccgctgtctatgtcagacagtaaaaagttgactaactcctctttgtcaccgtttctaccatatatgctcgatccatccaccaaag |
4388343 |
T |
|
| Q |
201 |
atg |
203 |
Q |
| |
|
||| |
|
|
| T |
4388342 |
atg |
4388340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 5268484 - 5268682
Alignment:
| Q |
5 |
gctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattg |
104 |
Q |
| |
|
|||||| ||| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5268484 |
gctttatgtttaaaattctccttgatcctttggtcattgtacacgagttgagcaagggtggtcttacccattccaccgagacccactatgctgattattg |
5268583 |
T |
|
| Q |
105 |
gtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatg |
203 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5268584 |
gtacatggttgcccttgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctggattcatccaccaaagatg |
5268682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 5299195 - 5299357
Alignment:
| Q |
41 |
ttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaa |
140 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||| || ||||||| |
|
|
| T |
5299195 |
ttgtacacaagttgagcaagggtggtttttcccattccacctagacccactatgctgattattggtacacggtcgccagcatctatgtcggaaagtaaaa |
5299294 |
T |
|
| Q |
141 |
aattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatg |
203 |
Q |
| |
|
| ||| ||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
5299295 |
atttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatg |
5299357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 6947699 - 6947873
Alignment:
| Q |
7 |
tttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggt |
106 |
Q |
| |
|
|||||| ||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||| || ||||| || || | ||||||||||||||||||||| |
|
|
| T |
6947699 |
tttaaggtcaaaatgctcctctatcttgttgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattgga |
6947798 |
T |
|
| Q |
107 |
acatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
181 |
Q |
| |
|
|| |||||||||||||| || | | |||||||| |||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
6947799 |
acctggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatatg |
6947873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 8455082 - 8455272
Alignment:
| Q |
5 |
gctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattg |
104 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||| |||||||| || || | ||| |||||||||||||||| |
|
|
| T |
8455082 |
gctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccctcctaaaccgactatgctgattattg |
8455181 |
T |
|
| Q |
105 |
gtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccac |
195 |
Q |
| |
|
| || ||||||||||| || || | | |||||||| |||||||| | ||||| ||| |||||| ||||||||||||| | |||||||| |
|
|
| T |
8455182 |
gaacctggttgccactatcattgcctgcaagtaaaaacttgattaatttttccttatcaacatctcgaccatatatgctcgactcatccac |
8455272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 6736418 - 6736596
Alignment:
| Q |
5 |
gctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattg |
104 |
Q |
| |
|
||||||||||||||||||| || ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || || | |||||||||||| ||||||| |
|
|
| T |
6736418 |
gctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctaattattg |
6736517 |
T |
|
| Q |
105 |
gtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgct |
183 |
Q |
| |
|
| || |||||||||||||| || | | |||||||| ||||||| | ||||| ||| ||||||||||||||||||| |
|
|
| T |
6736518 |
gaacctggttgccactgtcattgcctgtaagtaaaaacttgattagtttttccttatcatcatctctaccatatatgct |
6736596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6448387 - 6448286
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||| || ||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
6448387 |
ccaagatttaagttcaaaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatcccacccagacccactatgctgatt |
6448288 |
T |
|
| Q |
101 |
at |
102 |
Q |
| |
|
|| |
|
|
| T |
6448287 |
at |
6448286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 6554039 - 6553861
Alignment:
| Q |
5 |
gctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattg |
104 |
Q |
| |
|
||||||||||||||||||| || ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || || | |||||||||||||||||||| |
|
|
| T |
6554039 |
gctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattg |
6553940 |
T |
|
| Q |
105 |
gtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgct |
183 |
Q |
| |
|
| || ||||||||| ||| || | |||||||| |||||||| | ||||| ||| |||| |||||||||||||| |
|
|
| T |
6553939 |
gaacccggttgccaccgtcattgccttcaagtaaaaacttgattaatttttccttatcaacatccctaccatatatgct |
6553861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 8471985 - 8472159
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||| ||||| ||||| |||||||||||||| |||||||| ||||| ||| | ||||||||||||||| |
|
|
| T |
8471985 |
ccaaactttaagttcaaactgcttgtccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccaggcaaacccactatgctgata |
8472084 |
T |
|
| Q |
101 |
attggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctacca |
175 |
Q |
| |
|
||| ||| ||||||||| |||| ||| ||| || ||| | |||||||| || || |||||||| ||||||||| |
|
|
| T |
8472085 |
gttgatacttggttgccattgtcgttgtaagaaagcaaatacttgattaattcttctttgtcaccttctctacca |
8472159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 8590157 - 8590347
Alignment:
| Q |
5 |
gctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattg |
104 |
Q |
| |
|
|||||||| ||||||||||| | ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || || | ||| |||||||||||||||| |
|
|
| T |
8590157 |
gctttaagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattg |
8590256 |
T |
|
| Q |
105 |
gtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccac |
195 |
Q |
| |
|
| || |||||||||| || || | | |||||||| ||||||| | | ||| ||| |||||||||||||||||||| | |||||||| |
|
|
| T |
8590257 |
gaacgcggttgccactatcattgcctgcaagtaaaaacttgattagttttttcttatcaacatctctaccatatatgctcgactcatccac |
8590347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6721668 - 6721467
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||| ||||| |||||||| ||||| || |||||||| || ||| ||||||||||| |||||| |
|
|
| T |
6721668 |
ccaagctttaagttcatattgctccactatcctgtggtcattgtaaacaagctgggcaagggttgtcttacctatcccaatcagacccactatactgatt |
6721569 |
T |
|
| Q |
101 |
attggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaag |
200 |
Q |
| |
|
|| || || |||||| ||||||| | ||||| || || |||||||||| || || || ||| |||| |||||||||| | ||||||||||||||| |
|
|
| T |
6721568 |
atgggcacctggttgtcactgtcactatcagaaagcaagaaattgattatttcttctttctcatgctctcgaccatatatgaccgattcatccaccaaag |
6721469 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
6721468 |
at |
6721467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 6882956 - 6883111
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||| ||| ||||| |||||||| || ||||| ||||||||||| || ||||||||||| || ||| |
|
|
| T |
6882956 |
ccaagctttaagttcaaaatgctccgtgatcatgtcgtcattgtaaacaagctgggcgagagttgtcttacccatccccatcagacccactatactaatt |
6883055 |
T |
|
| Q |
101 |
attggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctc |
156 |
Q |
| |
|
|| ||| || ||||| |||||| |||||||| |||||||| || ||||| ||||| |
|
|
| T |
6883056 |
atgggtgcaaggttgtcactgtgaatgtcagaaagtaaaaatttaattaattcctc |
6883111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 6479583 - 6479405
Alignment:
| Q |
5 |
gctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattg |
104 |
Q |
| |
|
||||||||||||||||| |||| ||| ||| || |||||||||||||| |||||| ||||| || ||||| || || | ||| |||||||||||||| | |
|
|
| T |
6479583 |
gctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccaactatgctgattatcg |
6479484 |
T |
|
| Q |
105 |
gtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgct |
183 |
Q |
| |
|
| || ||| | |||||||| || | | |||||||| ||||| | || ||||||||| ||||||| ||||||||||| |
|
|
| T |
6479483 |
gaacctgggttccactgtcattgcctgcaagtaaaaatttgataagttcttccttgtcaacatctctgccatatatgct |
6479405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 6519763 - 6519647
Alignment:
| Q |
5 |
gctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattg |
104 |
Q |
| |
|
||||||||||||||||||| || || ||| ||| ||||| ||| | |||||||| ||||| ||||||||||| || | |||||||||||||||||||| |
|
|
| T |
6519763 |
gctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgttgagcaagggtggttttacccattcctcctaaacccactatgctgattattg |
6519664 |
T |
|
| Q |
105 |
gtacatggttgccactg |
121 |
Q |
| |
|
| || ||||| |||||| |
|
|
| T |
6519663 |
gaacctggttaccactg |
6519647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 6590933 - 6590753
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| ||||||| ||||| |||||| | ||||| || ||||||||||| ||| | ||||||||| | |||| |
|
|
| T |
6590933 |
ccaagctttaagttcaaattgctccagtatcttgtggtccttgtaaacaagccgggcaagggttgtcttacccatcccaatcatacccactatacagatt |
6590834 |
T |
|
| Q |
101 |
attggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
181 |
Q |
| |
|
|| |||||||||||| ||||| |||| || |||||||| || |||| ||||| || ||| ||||||||||||||| |
|
|
| T |
6590833 |
atgggtacatggttgtgactgtgactgtctgaaagtaaaaatttaattatttcctctttctcatgctctctaccatatatg |
6590753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13270193 - 13270086
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||||||||| | ||||||||||| || ||||||||||| |||||| |
|
|
| T |
13270193 |
ccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaagggctgtcttacccatccccatcagacccactatactgatt |
13270094 |
T |
|
| Q |
101 |
attggtac |
108 |
Q |
| |
|
|| ||||| |
|
|
| T |
13270093 |
atgggtac |
13270086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8568553 - 8568464
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccac |
90 |
Q |
| |
|
|||||||||||||||||| |||| || ||| ||||||| ||||| ||||| ||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
8568553 |
ccaagctttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatcccacctagacccac |
8568464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5281108 - 5281208
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||| | || || | |||||| |||||||||| |||||| |||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
5281108 |
ccaagctttatgttcaaaatgctctttaattctatcgtcgttatacacaagctcagcaagggtggtcttacccatcccaccagaacccactatggtgatt |
5281207 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
5281208 |
a |
5281208 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 6259606 - 6259786
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | ||||||||||| || ||||||||||| |||||| |
|
|
| T |
6259606 |
ccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttacccatccccgtcagacccactatactgatt |
6259705 |
T |
|
| Q |
101 |
attggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
181 |
Q |
| |
|
|| | ||| ||||| | ||| |||| || |||||||| ||||||| ||||| || |||| ||||||||||||||| |
|
|
| T |
6259706 |
atggatacctggtttcggttgtaactgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatg |
6259786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 6838466 - 6838304
Alignment:
| Q |
41 |
ttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaa |
140 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||| ||||| | ||| ||||||||||| ||| ||| ||||||||| |||| ||| |||||| ||| |
|
|
| T |
6838466 |
ttgtagacaagctgagcaagggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtaagacagcaaat |
6838367 |
T |
|
| Q |
141 |
aattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatg |
203 |
Q |
| |
|
| || |||| || || || ||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
6838366 |
agttaattatttcttctttttcaccttctctaccacgtatggaagattcatccaccaaagatg |
6838304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 7750451 - 7750559
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
|||||||||||||||||| ||||| || ||| ||||||||||||| ||||| | |||| || ||||||||||| ||| | ||||||||| |||||| |
|
|
| T |
7750451 |
ccaagctttaagttcaaattgctcatgtatcttgtggtcgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactatactgatt |
7750550 |
T |
|
| Q |
101 |
attggtaca |
109 |
Q |
| |
|
|| |||||| |
|
|
| T |
7750551 |
atgggtaca |
7750559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 6142735 - 6142842
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||||| ||||| | || ||| ||||| || |||||||| || ||| ||||| ||||| |||||| |
|
|
| T |
6142735 |
ccaagcattaagttcaaattgctcctgtatcctgtggtcattgtaaataaactgcgcaagggttgtcttacctatcccaggaagacctactatactgatt |
6142834 |
T |
|
| Q |
101 |
attggtac |
108 |
Q |
| |
|
|| ||||| |
|
|
| T |
6142835 |
atgggtac |
6142842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 6266143 - 6266249
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | |||||||| || || ||||||||||| |||||| |
|
|
| T |
6266143 |
ccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttaccaatccccgtcagacccactatactgatt |
6266242 |
T |
|
| Q |
101 |
attggta |
107 |
Q |
| |
|
|| |||| |
|
|
| T |
6266243 |
atgggta |
6266249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 6900540 - 6900662
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||| ||| | ||| |||||||| || || || ||||||||||| ||| | |||||||| |||||| |
|
|
| T |
6900540 |
ccaagctttaatttcaaaatgctccacgatcatgtcgtcatagtaaacaagctgggcgagggttgtcttacccatcccaatcacacccactacactgatt |
6900639 |
T |
|
| Q |
101 |
attggtacatggttgccactgtc |
123 |
Q |
| |
|
|| ||||| ||||||| |||||| |
|
|
| T |
6900640 |
atgggtacttggttgcgactgtc |
6900662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 7078 - 6960
Alignment:
| Q |
5 |
gctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattg |
104 |
Q |
| |
|
||||||||||||||||||| || ||| ||| ||| ||||||||||||| |||||| ||||| || ||||| || || | |||||||||||||||||||| |
|
|
| T |
7078 |
gctttaagttcaaaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattg |
6979 |
T |
|
| Q |
105 |
gtacatggttgccactgtc |
123 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
6978 |
gaacctggttgccactgtc |
6960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 6572903 - 6572789
Alignment:
| Q |
1 |
ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt |
100 |
Q |
| |
|
|||||||||||| ||||| || | || |||||| ||||| ||||| |||||||||||||| |||||||| ||||| ||||| | |||||||||||||||| |
|
|
| T |
6572903 |
ccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccacccaaacccactatgctgatt |
6572804 |
T |
|
| Q |
101 |
attggtacatggttg |
115 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
6572803 |
attgatacttggttg |
6572789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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