View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_35 (Length: 217)
Name: NF10542_low_35
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_35 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 48593712 - 48593500
Alignment:
| Q |
1 |
gcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactacttaatttatcacaaattcccttttattaaagttgaagaaatgtaaggg |
100 |
Q |
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| T |
48593712 |
gcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactactt----tatcacaaattcccttttactaaagttgaagaaatgtaaggg |
48593617 |
T |
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| Q |
101 |
ggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngccttgatctaaaat |
200 |
Q |
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| T |
48593616 |
ggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaatttttttgccttgatctaagat |
48593517 |
T |
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| Q |
201 |
cttacattccgaatcaa |
217 |
Q |
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||||||||||||||||| |
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| T |
48593516 |
cttacattccgaatcaa |
48593500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 48598323 - 48598111
Alignment:
| Q |
1 |
gcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactacttaatttatcacaaattcccttttattaaagttgaagaaatgtaaggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48598323 |
gcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactactt----tatcacaaattcccttttactaaagttgaagaaatgtaaggg |
48598228 |
T |
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| Q |
101 |
ggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngccttgatctaaaat |
200 |
Q |
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| T |
48598227 |
ggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaatttttttgccttgatctaagat |
48598128 |
T |
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| Q |
201 |
cttacattccgaatcaa |
217 |
Q |
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| T |
48598127 |
cttacattccgaatcaa |
48598111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 23222890 - 23222963
Alignment:
| Q |
103 |
ttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatc |
176 |
Q |
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| T |
23222890 |
ttcaatcttgcaactggaatgcaaaaaagatcattggctctaggagcagtcaatccaggccgttcatccatatc |
23222963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 23230593 - 23230708
Alignment:
| Q |
61 |
tcacaaattcccttttattaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccag |
160 |
Q |
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||||||||||||||||| |||| |||||||| ||| ||||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
23230593 |
tcacaaattcccttttacaaaagctgaagaaaagtatttgggttcattcttgaaatcggaatacaaataagatcattggctctaggagcggtcaatccag |
23230692 |
T |
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| Q |
161 |
gccgttcatccatatc |
176 |
Q |
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| | |||||||||||| |
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| T |
23230693 |
gtctttcatccatatc |
23230708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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