View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_37 (Length: 216)
Name: NF10542_low_37
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 34128213 - 34128086
Alignment:
| Q |
2 |
ctcgagtaacactttgtctccgacttagtctctaaagtatataaaaataataagatgtctctaaagtatacaaatctccatctcattagttcttgatgtt |
101 |
Q |
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| T |
34128213 |
ctcgagtaacactttgtctccgacttagtctctaaagtatataaaaataataagctgtccctaaagtatacaaatctccatctcattagttcttgacgtt |
34128114 |
T |
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| Q |
102 |
atgtattgacaagacactagggactcct |
129 |
Q |
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| T |
34128113 |
atgtattgacaagacactagggactcct |
34128086 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 36747773 - 36747817
Alignment:
| Q |
26 |
ttagtctctaaagtatataaaaataataagatgtctctaaagtat |
70 |
Q |
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| T |
36747773 |
ttagtctctaaagtatataagtataataagttgtctctaaagtat |
36747817 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 39077974 - 39078020
Alignment:
| Q |
26 |
ttagtctctaaagtatataaaaataataagatgtctctaaagtatac |
72 |
Q |
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| T |
39077974 |
ttagtctctaaattatataagtataataagttgtctctaaagtatac |
39078020 |
T |
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