View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_5 (Length: 397)
Name: NF10542_low_5
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 43070716 - 43071037
Alignment:
| Q |
11 |
caaaggaagtgactatgatgtggaagattctaaataaggaaatctcagtccaacaatatttcgaaaaggtgtgtaaataggtttatcacctacattagat |
110 |
Q |
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| T |
43070716 |
caaagcaagtgactatgatgtgaaagattctaaataaggaaatctccgtccaacaatattttgaaaaggtgtgtaaataggtttatcatctacattagat |
43070815 |
T |
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| Q |
111 |
gcaacaaaacaatcaacaacaacttacggatatagataaccaaaatttgagttaggtcctccttgaatctaaaatttgataacacagactgaccgttttg |
210 |
Q |
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| T |
43070816 |
gcaacaaaacaatcaaccacaacttacggatatagataaccaaaatttaagttaggtcctccttgaatctaaaatttgataatacagaatgaccgtttta |
43070915 |
T |
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| Q |
211 |
tcgatggttagat-aacttcattcgtcatgttgacgtaaatattatag-aataagacatacaacttttatgttattatctagtagtgtgcaagaattgaa |
308 |
Q |
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|||||||||| || ||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43070916 |
tcgatggttaaataaacttcatttgtcatgctgatgtaaatattatagaaataagacatacaacttttatgttattatctagtagtgtgcaagaattgaa |
43071015 |
T |
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| Q |
309 |
ggttgctttgagtataggaaga |
330 |
Q |
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|||||||||||||||||||||| |
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| T |
43071016 |
ggttgctttgagtataggaaga |
43071037 |
T |
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