View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_7 (Length: 366)
Name: NF10542_low_7
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_7 |
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| [»] scaffold0148 (2 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 28145 - 28201
Alignment:
| Q |
263 |
aaactgaaattggtcaacaaattataaacctcaaagctgatatcttccaattcatca |
319 |
Q |
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| T |
28145 |
aaactgaagttggtcaacaaattataaacctcaaagctgatgtcgtccaattgatca |
28201 |
T |
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Target: scaffold0148; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 27869 - 28005
Alignment:
| Q |
23 |
gaagaatttccctctcccaagtaatcattgtagaatccgggtaaacatttgcacacctcgtcattatcgttactgttacagctagcaaagtatccacatt |
122 |
Q |
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| T |
27869 |
gaagaatcttcctctccctggttatcattgtagaatcctggtaaacatttgcaaac---gctatcatcgtca---ttacagctagcaaagtttccacaag |
27962 |
T |
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| Q |
123 |
cattatatcttaaacatttgaaatttggctgcttccatctaac |
165 |
Q |
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| T |
27963 |
cattatatgttaaacatttgcttcttggctgcttccatataac |
28005 |
T |
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