View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10542_low_8 (Length: 361)
Name: NF10542_low_8
Description: NF10542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10542_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 277
Target Start/End: Original strand, 29144884 - 29145140
Alignment:
| Q |
24 |
cttagtatgttattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatc |
123 |
Q |
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| T |
29144884 |
cttagtatgttattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatc |
29144983 |
T |
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| Q |
124 |
gacatattgttgctgctatttgtgttgctccctttgcactctattttgaaaggtatttcattttcaattctatattttatttgcaaattatttcattaat |
223 |
Q |
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| T |
29144984 |
gacatattgttgctgctatttgtgttgctccttttgcactctattttgaaaggtaattcattttcaattctatattttatttgcaaattgtttcattaat |
29145083 |
T |
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| Q |
224 |
ctacc---taagtatggtgctctttcccatgcacttcacttccctttttgttctgtg |
277 |
Q |
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| T |
29145084 |
ctacctagtatatatagtactctttcccatgcacttcacttccctttttgttctgtg |
29145140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 277
Target Start/End: Complemental strand, 29227089 - 29226833
Alignment:
| Q |
24 |
cttagtatgttattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatc |
123 |
Q |
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| T |
29227089 |
cttagtatgttattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatc |
29226990 |
T |
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| Q |
124 |
gacatattgttgctgctatttgtgttgctccctttgcactctattttgaaaggtatttcattttcaattctatattttatttgcaaattatttcattaat |
223 |
Q |
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| T |
29226989 |
gacatattgttgctgctatttgtgttgctccttttgcactctattttgaaaggtaattcattttcaattctatattttatttgcaaattgttgcattaat |
29226890 |
T |
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| Q |
224 |
ctacc---taagtatggtgctctttcccatgcacttcacttccctttttgttctgtg |
277 |
Q |
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| T |
29226889 |
ctacctagtatatatagtactctttcccatgcactttacttccctttttgttctgtg |
29226833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 5306962 - 5306809
Alignment:
| Q |
24 |
cttagtatgttattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatc |
123 |
Q |
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||||| |||||||||||||||||||||| ||||||||| |||||| ||||||| ||||| |||||||| || |||| |||||||||||||| ||| |||| |
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| T |
5306962 |
cttagcatgttattagtgcaaatatttggaactgggatacaacttttatcaagggtcatcttggttcagggcactttcatttttgcactcaatgcatatc |
5306863 |
T |
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| Q |
124 |
gacatattgttgctgctatttgtgttgctccctttgcactctattttgaaaggt |
177 |
Q |
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| T |
5306862 |
gacaaattgttgctgctgtttgtgtcgccccctttgcactttattttgaaaggt |
5306809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 9958672 - 9958732
Alignment:
| Q |
301 |
agaaactgagaacaaaggagacataaaacgctcacaacattggtacgcaattttctacaaa |
361 |
Q |
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| T |
9958672 |
agaaactgagaaaaaaggagacataaaaagctcacaaaattggtacgcaattttctacaaa |
9958732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 9964668 - 9964716
Alignment:
| Q |
301 |
agaaactgagaacaaaggagacataaaacgctcacaacattggtacgca |
349 |
Q |
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| T |
9964668 |
agaaactgagaaaaaaggagacataaaaagctcacaaaattggtacgca |
9964716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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