View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10543_1 (Length: 896)

Name: NF10543_1
Description: NF10543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10543_1
NF10543_1
[»] chr4 (6 HSPs)
chr4 (24-868)||(17433179-17434029)
chr4 (484-591)||(8718017-8718125)
chr4 (517-591)||(10583738-10583812)
chr4 (541-612)||(5335112-5335183)
chr4 (287-324)||(14936704-14936741)
chr4 (771-823)||(25642189-25642242)
[»] chr8 (6 HSPs)
chr8 (488-604)||(26280042-26280159)
chr8 (541-635)||(40743469-40743563)
chr8 (539-582)||(11917834-11917877)
chr8 (546-656)||(39812749-39812859)
chr8 (539-582)||(11910073-11910116)
chr8 (287-324)||(45494771-45494808)
[»] chr5 (9 HSPs)
chr5 (485-636)||(13002513-13002665)
chr5 (485-636)||(13077171-13077323)
chr5 (382-664)||(16551030-16551318)
chr5 (506-598)||(18220866-18220958)
chr5 (502-591)||(18476268-18476357)
chr5 (92-248)||(21181467-21181622)
chr5 (400-464)||(2136520-2136587)
chr5 (287-324)||(15326333-15326370)
chr5 (287-324)||(18712399-18712436)
[»] chr2 (4 HSPs)
chr2 (502-636)||(27728301-27728435)
chr2 (484-635)||(22116514-22116666)
chr2 (484-598)||(15583000-15583116)
chr2 (772-839)||(22116797-22116864)
[»] chr1 (7 HSPs)
chr1 (488-591)||(32044576-32044681)
chr1 (502-582)||(20618060-20618140)
chr1 (541-612)||(8933978-8934049)
chr1 (512-587)||(19623639-19623714)
chr1 (567-634)||(50049749-50049816)
chr1 (484-598)||(14526612-14526723)
chr1 (287-324)||(21755634-21755671)
[»] scaffold0149 (1 HSPs)
scaffold0149 (500-591)||(32037-32128)
[»] chr6 (3 HSPs)
chr6 (501-582)||(15549447-15549528)
chr6 (541-590)||(28609206-28609255)
chr6 (382-514)||(28608993-28609129)
[»] chr3 (2 HSPs)
chr3 (91-271)||(8915968-8916149)
chr3 (541-598)||(44119266-44119323)
[»] chr7 (6 HSPs)
chr7 (502-598)||(7395171-7395267)
chr7 (541-598)||(19416359-19416416)
chr7 (484-600)||(31611811-31611928)
chr7 (514-591)||(27128755-27128831)
chr7 (401-579)||(29020652-29020840)
chr7 (516-598)||(4810456-4810537)
[»] scaffold0498 (1 HSPs)
scaffold0498 (502-598)||(2845-2941)
[»] scaffold0078 (1 HSPs)
scaffold0078 (517-582)||(18518-18583)
[»] scaffold0496 (1 HSPs)
scaffold0496 (502-556)||(9629-9683)
[»] scaffold0145 (1 HSPs)
scaffold0145 (284-322)||(33380-33418)


Alignment Details
Target: chr4 (Bit Score: 756; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 24 - 868
Target Start/End: Complemental strand, 17434029 - 17433179
Alignment:
Q  24 atcatcaacatagactagaataataaacatatcatattaactagattaattttacgaaaagtgttaagtcaatatgtcctctagaaaaaccattttcttt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17434029 atcatcaacatagactagaataataaacatatcatattaactagattaattttacgaaaagtgttaagtcaatatgtcctctagaaaaaccattttcttt 17433930  T
Q  124 tagaaaatatctcaatctctcgtaccaatttcttggtgcttgtttgagaccatatagagattttaagagtttgaaagcatggctaggtttttccttgttg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433929 tagaaaatatctcaatctctcgtaccaatttcttggtgcttgtttgagaccatatagagattttaagagtttgaaagcatggctaggtttttccttgttg 17433830  T
Q  224 atgaaactaagagtttgatgaacataaacttcttcatttagaaatccactnnnnnnntggacattttacatccatttgaaaaagtttaatgcatttatga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||    
T  17433829 atgaaactaagagtttgatgaacataaacttcttcatttagaaatccactaaaaaaatggacattttacatccatttgaaaaaatttaatgcatttatga 17433730  T
Q  324 gttgta------cataagtttaatacatttagagagaaaaacatagagaggaagttgtgagtatcaccataagaaagctagcgagcttggattcaagctt 417  Q
    ||||||      |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433729 gttgtatatgcacataagtttaatgcatttagagagaaaaacatagagaggaagttgtgagtatcaccataagaaagctagcgagcttggattcaagctt 17433630  T
Q  418 gttcatgcttctccaacaaccaacctttctttgttagttatgctctcactagctaactgaactctctgtgttgggattagatttaatagctaggattcta 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433629 gttcatgcttctccaacaaccaacctttctttgttagttatgctctcactagctaactgaactctctgtgttgggattagatttaatagctaggattcta 17433530  T
Q  518 tgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttttgccgacgtgcaattcgta 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433529 tgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttttgccgacgtgcaattcgta 17433430  T
Q  618 aatgaacttttgatttagtttaagtaaagaattgccttaatatctaacgtacatatctggtttacaccgtgtgtaggtgttaatactcaagaaatagcga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433429 aatgaacttttgatttagtttaagtaaagaattgccttaatatctaacgtacatatctggtttacaccgtgtgtaggtgttaatactcaagaaatagcga 17433330  T
Q  718 ttaggtctatattcatgtaaaactatatggttgtatgccattnnnnnnnnnttggctattttgccaccgagcattgaaagtcagttggtttaatggatct 817  Q
    |||||||||| |||||||||||||||||||||||||||||||         || ||||||||||||||||||||||||||||| |||||||||||||| |    
T  17433329 ttaggtctatgttcatgtaaaactatatggttgtatgccattaaaaaaaaattagctattttgccaccgagcattgaaagtcaattggtttaatggattt 17433230  T
Q  818 tgcatcatcatccaggaatggagatgtgtgccaagggatgagtggagttat 868  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433229 tgcatcatcatccaggaatggagatgtgtgccaagggatgagtggagttat 17433179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 484 - 591
Target Start/End: Complemental strand, 8718125 - 8718017
Alignment:
Q  484 tgtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 582  Q
    |||||||||||| ||| ||| ||| ||||||| |||| || ||||||| | |||||| ||||||  |||||||||||| |||||||||||| ||||||||    
T  8718125 tgtgttgggattggatgtaaatagttaggattttatgcagtactcttaatatggctggttgtattcgatttatgcatttaatataatctttagtttaaat 8718026  T
Q  583 gtgttctta 591  Q
     ||||||||    
T  8718025 atgttctta 8718017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 517 - 591
Target Start/End: Original strand, 10583738 - 10583812
Alignment:
Q  517 atgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 591  Q
    |||||| ||||||| |||||||| ||||||||||||| |||||||||| |||||||| ||||||||  |||||||    
T  10583738 atgtagtactcttaatctggctggttgtatatgatttttgcattcaatgtaatctttagtttaaattcgttctta 10583812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 612
Target Start/End: Complemental strand, 5335183 - 5335112
Alignment:
Q  541 ttgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttttgccgacgtgcaat 612  Q
    ||||||||||||||||||||||||||  |||||  | ||||| |||||| | |||||||||| || ||||||    
T  5335183 ttgtatatgatttatgcattcaatattttctttattataaatctgttctgaatgcttttgccaacatgcaat 5335112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 14936741 - 14936704
Alignment:
Q  287 ttttacatccatttgaaaaagtttaatgcatttatgag 324  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  14936741 ttttacgtccatttgaaaaagttttatgcatttatgag 14936704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 823
Target Start/End: Original strand, 25642189 - 25642242
Alignment:
Q  771 ggctattttgccaccga-gcattgaaagtcagttggtttaatggatcttgcatc 823  Q
    ||||| ||||||||||| |||| ||||||||||||||| ||||||||| |||||    
T  25642189 ggctagtttgccaccgatgcatggaaagtcagttggttcaatggatctcgcatc 25642242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 488 - 604
Target Start/End: Complemental strand, 26280159 - 26280042
Alignment:
Q  488 ttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgt 586  Q
    |||||||||||| ||| || |||||||||||||||  ||||||| |||| || |||| |||||||||||||||||||||||||||| ||||||||| |||    
T  26280159 ttgggattagatgtaaatatctaggattctatgtattactcttaatctgactaattgcatatgatttatgcattcaatataatcttaggtttaaatctgt 26280060  T
Q  587 tcttactgcttttgccga 604  Q
    ||||| ||||||||||||    
T  26280059 tcttaatgcttttgccga 26280042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 635
Target Start/End: Original strand, 40743469 - 40743563
Alignment:
Q  541 ttgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttttgccgacgtgcaattcgtaaatgaacttttgatttag 635  Q
    ||||||||||| |||||||||||||||||||||| ||||||| | |  ||| |||||||| ||||| ||| | |||||| ||  |||||||||||    
T  40743469 ttgtatatgatctatgcattcaatataatctttgatttaaatatttatttaatgcttttgtcgacgagcactccgtaaacgatattttgatttag 40743563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 539 - 582
Target Start/End: Complemental strand, 11917877 - 11917834
Alignment:
Q  539 gattgtatatgatttatgcattcaatataatctttggtttaaat 582  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  11917877 gattgtatatgatttatgtattcaatataacctttggtttaaat 11917834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 546 - 656
Target Start/End: Original strand, 39812749 - 39812859
Alignment:
Q  546 tatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttttgccgacgtgcaattcgtaaatgaacttttgatttagtttaagtaaa 645  Q
    ||||||||||| |||| || ||||||| || |||||| |||||| | |||||||| |||||  || |||  |||||||||||| ||||||| | || ||     
T  39812749 tatgatttatgtattcgatgtaatcttcggattaaatatgttctcaatgcttttgtcgacgaacacttcacaaatgaacttttaatttagtatgagcaat 39812848  T
Q  646 gaattgcctta 656  Q
    |||||||||||    
T  39812849 gaattgcctta 39812859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 582
Target Start/End: Original strand, 11910073 - 11910116
Alignment:
Q  539 gattgtatatgatttatgcattcaatataatctttggtttaaat 582  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||    
T  11910073 gattgtatatgatttatgtattcaatataacctttgttttaaat 11910116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 45494771 - 45494808
Alignment:
Q  287 ttttacatccatttgaaaaagtttaatgcatttatgag 324  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  45494771 ttttacgtccatttgaaaaagttttatgcatttatgag 45494808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 485 - 636
Target Start/End: Complemental strand, 13002665 - 13002513
Alignment:
Q  485 gtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatg 583  Q
    ||||||||||||||| ||| || ||| |||||||||||  ||||||| | |||||  ||||||||||||||||||||||||||||||||||||||||||     
T  13002665 gtgttgggattagatgtaaatatctaagattctatgtattactcttaatttggctagttgtatatgatttatgcattcaatataatctttggtttaaata 13002566  T
Q  584 tgttcttactgcttttgccgacgtgcaattcgtaaatgaacttttgatttagt 636  Q
    | |||||| | |||||| ||||| ||| ||   |||||  |||||||||||||    
T  13002565 tattcttaatacttttgtcgacgagcacttaacaaatgctcttttgatttagt 13002513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 485 - 636
Target Start/End: Complemental strand, 13077323 - 13077171
Alignment:
Q  485 gtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatg 583  Q
    ||||||||||||||| ||| || ||| |||||||||||  ||||||| | |||||  ||||||||||||||||||||||||||||||||||||||||||     
T  13077323 gtgttgggattagatgtaaatatctaagattctatgtattactcttaatttggctagttgtatatgatttatgcattcaatataatctttggtttaaata 13077224  T
Q  584 tgttcttactgcttttgccgacgtgcaattcgtaaatgaacttttgatttagt 636  Q
    | |||||| | |||||| ||||| ||| ||   |||||  |||||||||||||    
T  13077223 tattcttaatacttttgtcgacgagcacttaacaaatgttcttttgatttagt 13077171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 382 - 664
Target Start/End: Complemental strand, 16551318 - 16551030
Alignment:
Q  382 caccataagaaagctagcgagcttggattcaagcttgttcatgcttctccaaca---accaacctttctttgttagttatgctctcactagctaactgaa 478  Q
    ||||||||||  ||||| ||| ||||||||||||||||| ||| ||||||||||   | ||| |||| ||||||||||||||||||  | | ||| ||||    
T  16551318 caccataagagggctagggagattggattcaagcttgttgatgtttctccaacatttatcaatctttatttgttagttatgctctctatgg-taaatgaa 16551220  T
Q  479 ctctctgtgttg---ggattagattta-atagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttg 574  Q
    |||| | | |||   ||||||||| || |||| |||| |||||||||| |||  || |||||||  ||||||||||||| ||||||||||||||| |||     
T  16551219 ctctattttttgttaggattagatgtagatagttagggttctatgtagaacttgtaatctggcttgttgtatatgatttttgcattcaatataatattta 16551120  T
Q  575 gtttaaatgtgttcttactgcttttgccgacgtgcaattcgtaaatgaacttttgatttagtttaagtaaagaattgccttaatatctaa 664  Q
    |||||||| | |||||| ||||| ||  |||| ||| |    ||||||| |||||||||||| | ||| |||||| | |||| |||||||    
T  16551119 gtttaaatctattcttaatgcttatgtggacgagcactctacaaatgaaattttgatttagtatgagtgaagaatcgacttattatctaa 16551030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 506 - 598
Target Start/End: Complemental strand, 18220958 - 18220866
Alignment:
Q  506 gctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttt 598  Q
    ||||| ||||||||| | ||||||| | ||| || ||||||||||||||||||||||||||||| ||| |||||||| | |||||| ||||||    
T  18220958 gctagaattctatgtggtactcttaatttggttggttgtatatgatttatgcattcaatataatttttagtttaaatttattcttaatgcttt 18220866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 591
Target Start/End: Complemental strand, 18476357 - 18476268
Alignment:
Q  502 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 591  Q
    ||||||||||| ||||||||   |||||| | | | || |||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  18476357 aatagctaggaatctatgtattgctcttaatattgatggttgtatatgatttacgcattcaatataatctttagtttaaatatgttctta 18476268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 248
Target Start/End: Complemental strand, 21181622 - 21181467
Alignment:
Q  92 tcaatatgtcctctagaaaaaccattttcttttagaaaatatctcaatctctcgtaccaatttcttggtgcttgtttgagaccatatagagattttaaga 191  Q
    ||||| |||| ||| ||||||| ||||||||| | |||  | ||||||||||| || |||   |||||||||||||||||||||||||||   ||   ||    
T  21181622 tcaatttgtcatcttgaaaaac-attttctttcaaaaaggaactcaatctctcatatcaagcccttggtgcttgtttgagaccatatagaaccttagtga 21181524  T
Q  192 gtttgaaagcatggctaggtttttccttgttgatgaaactaagagtttgatgaacat 248  Q
    ||||||||  |||  |||||||||  ||||||||||||| | |||||||||||||||    
T  21181523 gtttgaaaatatgattaggttttttgttgttgatgaaaccaggagtttgatgaacat 21181467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 464
Target Start/End: Complemental strand, 2136587 - 2136520
Alignment:
Q  400 gagcttggattcaagcttgttcatgcttctccaaca---accaacctttctttgttagttatgctctc 464  Q
    ||||||||||||||||||||| ||| |||||||| |   | |||||||  ||||||||||||||||||    
T  2136587 gagcttggattcaagcttgttgatgtttctccaatatgtatcaaccttcttttgttagttatgctctc 2136520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 15326333 - 15326370
Alignment:
Q  287 ttttacatccatttgaaaaagtttaatgcatttatgag 324  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  15326333 ttttacgtccatttgaaaaagttttatgcatttatgag 15326370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 18712436 - 18712399
Alignment:
Q  287 ttttacatccatttgaaaaagtttaatgcatttatgag 324  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  18712436 ttttacgtccatttgaaaaagttttatgcatttatgag 18712399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 502 - 636
Target Start/End: Complemental strand, 27728435 - 27728301
Alignment:
Q  502 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttttgc 601  Q
    ||||| || |||||||| ||| ||| ||| |||  ||||||| |||||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| |    
T  27728435 aatagttaagattctatatagtacttttaatcttcctgattgcatatgatttatgcattcaatataaactttgatttaaatatgttcttaatgcttttac 27728336  T
Q  602 cgacgtgcaattcgtaaatgaacttttgatttagt 636  Q
    ||||| | | | || ||| ||||||||||||||||    
T  27728335 cgacgagaattccggaaaggaacttttgatttagt 27728301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 484 - 635
Target Start/End: Original strand, 22116514 - 22116666
Alignment:
Q  484 tgtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 582  Q
    |||||||||||||||| ||| ||||||||  ||| || || | | ||| |||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  22116514 tgtgttgggattagatgtaaatagctaggcctctctgcagtatttttaatctggctagttgtatatgatttatgcattcaatataatccttggtttaaat 22116613  T
Q  583 gtgttcttactgcttttgccgacgtgcaattcgtaaatgaacttttgatttag 635  Q
       |||||| |||||| ||  ||| ||| |||  |||||||||||| ||||||    
T  22116614 catttcttaatgctttagctaacgagcacttccaaaatgaactttttatttag 22116666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 484 - 598
Target Start/End: Complemental strand, 15583116 - 15583000
Alignment:
Q  484 tgtgttgggattagatttaa--tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaa 581  Q
    ||||||| |||||||| |||  ||||||| ||||| |||||  |||||| | ||| || |||||||||||||||| ||| |||||||||||| ||||||     
T  15583116 tgtgttgagattagatgtaagatagctagaattctttgtagtgctcttaatatgggtggttgtatatgatttatgtattaaatataatctttagtttaat 15583017  T
Q  582 tgtgttcttactgcttt 598  Q
    | |||||||| ||||||    
T  15583016 tctgttcttaatgcttt 15583000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 839
Target Start/End: Original strand, 22116797 - 22116864
Alignment:
Q  772 gctattttgccaccgagcattgaaagtcagttggtttaatggatcttgcatcatcatccaggaatgga 839  Q
    |||||||| ||||||||| | || |||||||||||| ||||| ||| || || |||||||||||||||    
T  22116797 gctattttaccaccgagcgtcgagagtcagttggttcaatgggtctcgcgtcgtcatccaggaatgga 22116864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 488 - 591
Target Start/End: Original strand, 32044576 - 32044681
Alignment:
Q  488 ttgggattagatttaa-tagctaggattcta-tgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtg 585  Q
    |||||||||||| ||| ||||||||||| || ||||  ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| || ||    
T  32044576 ttgggattagatgtaagtagctaggattttaatgtattactcttaatctagctgattgtatatgatttatgcattcaatataacctttggtttagatttg 32044675  T
Q  586 ttctta 591  Q
    ||||||    
T  32044676 ttctta 32044681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 502 - 582
Target Start/End: Complemental strand, 20618140 - 20618060
Alignment:
Q  502 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 582  Q
    ||||| ||||| ||||||||| ||||||| ||||| || |||||||||||||||| ||||||||||||||||  |||||||    
T  20618140 aatagataggaatctatgtagtactcttaatctggttggttgtatatgatttatggattcaatataatctttaatttaaat 20618060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 541 - 612
Target Start/End: Original strand, 8933978 - 8934049
Alignment:
Q  541 ttgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttttgccgacgtgcaat 612  Q
    ||||||||||| ||||||||| |||| || |||||||||||| |||| ||| |||||||| ||| |||||||    
T  8933978 ttgtatatgatctatgcattctatatcatatttggtttaaatatgtttttaatgcttttgtcgatgtgcaat 8934049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 512 - 587
Target Start/End: Original strand, 19623639 - 19623714
Alignment:
Q  512 attctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgtt 587  Q
    |||||||| ||| |||||| | ||| || ||||||||||||||| |||||||| |||||||| |||||||| ||||    
T  19623639 attctatgcagcgctcttaatatggttggttgtatatgatttatccattcaatgtaatctttagtttaaatatgtt 19623714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 50049816 - 50049749
Alignment:
Q  567 aatctttggtttaaatgtgttcttactgcttttgccgacgtgcaattcgtaaatgaacttttgattta 634  Q
    |||||||||||||||| |||||||| |||||||||||||  ||| | |  |||||||||||| |||||    
T  50049816 aatctttggtttaaatttgttcttaatgcttttgccgacaagcactccacaaatgaactttttattta 50049749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 484 - 598
Target Start/End: Original strand, 14526612 - 14526723
Alignment:
Q  484 tgtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 582  Q
    |||||||||||| ||| ||| ||| ||||||||||||||| | ||||| | ||| |||    ||||||||||| ||||||||||| | ||| ||||||||    
T  14526612 tgtgttgggattggatgtaaatagataggattctatgtagtattcttaatatggttga----atatgatttatacattcaatatactttttagtttaaat 14526707  T
Q  583 gtgttcttactgcttt 598  Q
     | |||||| ||||||    
T  14526708 ttcttcttaatgcttt 14526723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 21755671 - 21755634
Alignment:
Q  287 ttttacatccatttgaaaaagtttaatgcatttatgag 324  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  21755671 ttttacgtccatttgaaaaagttttatgcatttatgag 21755634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 500 - 591
Target Start/End: Complemental strand, 32128 - 32037
Alignment:
Q  500 ttaatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 591  Q
    |||||||||||||||||||||| |||| ||  | ||| || |||| ||| ||||||| |||||||||||||||||||||||||  |||||||    
T  32128 ttaatagctaggattctatgtaccactattcatgtggatggttgtctatcatttatgaattcaatataatctttggtttaaatccgttctta 32037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 582
Target Start/End: Complemental strand, 15549528 - 15549447
Alignment:
Q  501 taatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 582  Q
    |||||||||||| ||||||||| ||| ||| |||| ||  |||| |||||||||||||||||||||||| ||| ||||||||    
T  15549528 taatagctaggaatctatgtagtacttttaatctgactttttgtgtatgatttatgcattcaatataatttttagtttaaat 15549447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 541 - 590
Target Start/End: Original strand, 28609206 - 28609255
Alignment:
Q  541 ttgtatatgatttatgcattcaatataatctttggtttaaatgtgttctt 590  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  28609206 ttgtatatgatttatgcattcaatataatcttttgtttaaatttgttctt 28609255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 514
Target Start/End: Original strand, 28608993 - 28609129
Alignment:
Q  382 caccataagaaagctagcgagcttggattcaagcttgttcatgcttctccaacaac---caacctttctttgttagttatgctctcactagctaactgaa 478  Q
    ||||||| || |||||| |||||||||||||||||| || |||||||||||||| |   |||||||   |||||||||||| |||   | | ||||| ||    
T  28608993 caccataggagagctagggagcttggattcaagctt-ttgatgcttctccaacatctttcaaccttctcttgttagttatgttctacatggataactaaa 28609091  T
Q  479 ctctc-tgtgttgggattagat-ttaatagctaggatt 514  Q
    ||||| |||||| ||||||||| | |||||||||||||    
T  28609092 ctctcttgtgttaggattagatgtaaatagctaggatt 28609129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 8916149 - 8915968
Alignment:
Q  91 gtcaatatgtcctctagaaaaaccatttt-cttttagaaaatatctcaatctctcgtaccaatttcttggtgcttgtttgagaccatatagagattttaa 189  Q
    |||||| ||||||||||||||||| |||| | |||||| || |  |||||||||| ||||||   |   ||| || ||||||||||||||||||| ||      
T  8916149 gtcaatctgtcctctagaaaaaccctttttcctttagataagagttcaatctctcataccaaacccaatgtgattatttgagaccatatagagatcttgt 8916050  T
Q  190 gagtttgaaagcatggctaggtttttccttgttgatgaaactaagagtttgatgaacataaacttcttcatttagaaatcca 271  Q
     ||||||||| ||||| | |||||||| || || || |||||| ||| ||||| |||||| || |||||||| |||||||||    
T  8916049 aagtttgaaaacatggtttggtttttctttattaataaaactaggaggttgataaacatagacgtcttcattaagaaatcca 8915968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 598
Target Start/End: Original strand, 44119266 - 44119323
Alignment:
Q  541 ttgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttt 598  Q
    ||||||||||||||| ||||||||||||| ||| |||||||  |||| ||| ||||||    
T  44119266 ttgtatatgatttatacattcaatataatatttagtttaaacttgtttttaatgcttt 44119323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 502 - 598
Target Start/End: Complemental strand, 7395267 - 7395171
Alignment:
Q  502 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttt 598  Q
    ||||| ||||| ||||||||| | | ||| ||| |||  || |||| |||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  7395267 aatagttaggaatctatgtagtaatattaatcttgcttgttatataagatttatgcattcaatataacctttagtttaaatgtgttcttaatgcttt 7395171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 541 - 598
Target Start/End: Complemental strand, 19416416 - 19416359
Alignment:
Q  541 ttgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttt 598  Q
    |||||||||||||||| |||||||||||||||| ||||||||  ||||||| ||||||    
T  19416416 ttgtatatgatttatgtattcaatataatctttagtttaaattcgttcttattgcttt 19416359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 484 - 600
Target Start/End: Complemental strand, 31611928 - 31611811
Alignment:
Q  484 tgtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 582  Q
    |||||||||||||||| ||| ||||| |||||||||| || | |||||   |||||  || ||||||||| || ||||||||||||||||| |||||| |    
T  31611928 tgtgttgggattagatgtaaatagcttggattctatgcagtaatcttaacatggctagttatatatgattcatccattcaatataatctttagtttaact 31611829  T
Q  583 gtgttcttactgcttttg 600  Q
     ||||||||  |||||||    
T  31611828 ttgttcttaaagcttttg 31611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 591
Target Start/End: Complemental strand, 27128831 - 27128755
Alignment:
Q  514 tctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 591  Q
    ||||||||| ||| ||| ||| | || ||||||||||||||| ||||||||||||| ||| |||||||| ||||||||    
T  27128831 tctatgtagtactattaatcttgttggttgtatatgatttatacattcaatataat-tttagtttaaatatgttctta 27128755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 579
Target Start/End: Complemental strand, 29020840 - 29020652
Alignment:
Q  401 agcttggattcaagcttgttcatgcttctccaacaac---caacctttctttgttagt--tatgctctcactagctaactgaactctc---tgtgttggg 492  Q
    ||||||||  |||||||||||||||||||| |||| |   ||||||||||||||||||  |||||||||    | ||| | |||||||   ||||||| |    
T  29020840 agcttggagacaagcttgttcatgcttctcaaacatcaatcaacctttctttgttagtgttatgctctccacgggtaattaaactctcatttgtgttgag 29020741  T
Q  493 attagatttaa-tagctaggattct-atgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggttta 579  Q
    ||||||  ||| || || | ||||| ||||| |||||||||| ||  || |||||||||||||||| ||| |||||||||||| |||||    
T  29020740 attagaggtaaatatctcgaattctgatgtatcactcttagtttgtttggttgtatatgatttatgtatttaatataatctttagttta 29020652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 598
Target Start/End: Original strand, 4810456 - 4810537
Alignment:
Q  516 tatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttt 598  Q
    ||||||| ||||||||| ||| || ||||||||||||||||  ||||| || || ||| |||||||| |||||||| ||||||    
T  4810456 tatgtagtactcttagtttgggtggttgtatatgatttatgttttcaagattat-tttagtttaaatttgttcttaatgcttt 4810537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 598
Target Start/End: Original strand, 2845 - 2941
Alignment:
Q  502 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttt 598  Q
    |||| ||| |||| ||||||| || |||| ||||| |  |||||||||||||||||| | ||||||||||||  ||||||| |||||||| ||||||    
T  2845 aatatctatgattatatgtagtacgcttaatctggattgttgtatatgatttatgcaattaatataatcttttatttaaatttgttcttaatgcttt 2941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 582
Target Start/End: Complemental strand, 18583 - 18518
Alignment:
Q  517 atgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 582  Q
    |||||| ||||||| |||||||| || || |||||||||||||||||| |||| ||| ||||||||    
T  18583 atgtagtactcttaatctggctggttatacatgatttatgcattcaatttaatatttagtttaaat 18518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 502 - 556
Target Start/End: Original strand, 9629 - 9683
Alignment:
Q  502 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatg 556  Q
    |||||||| || ||||||||  ||||||||||| |||| ||||||||||||||||    
T  9629 aatagctacgaatctatgtaatactcttagtctcgctgtttgtatatgatttatg 9683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 33380 - 33418
Alignment:
Q  284 acattttacatccatttgaaaaagtttaatgcatttatg 322  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  33380 acatttcacatccatttgaaaaagtttaatgcttttatg 33418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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