View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10543_2 (Length: 457)
Name: NF10543_2
Description: NF10543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10543_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 457
Target Start/End: Complemental strand, 13307388 - 13306946
Alignment:
| Q |
14 |
agagcatagatggagagattaatatgttaagctatggtgcatgaagactgtgttttggatctatttgaatgaaaaatcagataattttgcacgttattga |
113 |
Q |
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| T |
13307388 |
agagcatatatggagggaataatttgttaagctgtggtgcatgaagactgtgttttggacc-atttgaatgaaaaatcggataattttgcatgttaatga |
13307290 |
T |
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| Q |
114 |
agttcatctgaatacttgaactttacatcctttttggataatttctagagtttaacatcggtctgcactgattacaatatttcattactgttccttgaat |
213 |
Q |
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| T |
13307289 |
agttcatctgaatacttgaactttacatcctttttggataatttctagagtttaacatcggtctgcactgattacaatatttcattactgttccttgaat |
13307190 |
T |
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| Q |
214 |
ttaatatgtttcactatatatttaaacagatcagtgcaggagcagtcatgcttacggattgcgtttattggctcattatttttccatttcttaccctgag |
313 |
Q |
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| T |
13307189 |
ttaatatgtttcactatgtatttaaacagattagtgcaggagcagtcatgcttacggattgcatttattggctcattatttttccatttcttaccctgag |
13307090 |
T |
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| Q |
314 |
agattatgatttaaactttgtgagtagcaattttaaatattttcatacttatactctcttgctacgtgctgcatattaaatgtttcttaagtttctacca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13307089 |
agattatgatttaaactttgtgagtagcaattttaaatattttcatacttatactctcttgctacgtgctgcatattaaatgtttcttaagtttctacca |
13306990 |
T |
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| Q |
414 |
gtagctaatctaatgggcgacatatacttagactgtcatgaagc |
457 |
Q |
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| T |
13306989 |
gtagctaatctaatgggtgacatatacttagactgtcatgaagc |
13306946 |
T |
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