View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10543_3 (Length: 434)

Name: NF10543_3
Description: NF10543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10543_3
NF10543_3
[»] scaffold0003 (2 HSPs)
scaffold0003 (322-434)||(34641-34753)
scaffold0003 (322-434)||(41308-41423)
[»] chr2 (3 HSPs)
chr2 (153-302)||(923592-923737)
chr2 (322-434)||(14455449-14455561)
chr2 (20-82)||(22996457-22996517)
[»] chr3 (1 HSPs)
chr3 (153-368)||(46833160-46833357)
[»] chr6 (1 HSPs)
chr6 (322-434)||(27445935-27446050)
[»] chr8 (1 HSPs)
chr8 (153-310)||(27540883-27541035)
[»] chr7 (1 HSPs)
chr7 (150-209)||(45032127-45032186)
[»] chr5 (1 HSPs)
chr5 (148-209)||(4357204-4357264)


Alignment Details
Target: scaffold0003 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 322 - 434
Target Start/End: Original strand, 34641 - 34753
Alignment:
Q  322 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcaga 421  Q
    ||||||||| ||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  34641 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcata 34740  T
Q  422 attatatattttt 434  Q
    |||||||||||||    
T  34741 attatatattttt 34753  T

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Target: scaffold0003; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 322 - 434
Target Start/End: Original strand, 41308 - 41423
Alignment:
Q  322 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgc 418  Q
    ||||||||| ||||   |||||||||||||||||||||||||||||| ||    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  41308 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgc 41407  T
Q  419 agaattatatattttt 434  Q
    | |||||||| |||||    
T  41408 ataattatattttttt 41423  T

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Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 153 - 302
Target Start/End: Complemental strand, 923737 - 923592
Alignment:
Q  153 tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag 252  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||       |||||||||||||||  || |||| |||||||    
T  923737 tgcattcatttctaaactctaaaaagacactatttttctatctaaactcttaaagaaatctaaaaagacaccatttttcaatccaaactctt-aaagaag 923639  T
Q  253 aaaaacatatgattagagacacactttaaattaatagttattgaaacata 302  Q
    |||||||||||||||||||||||||||||   |||||| |||||||||||    
T  923638 aaaaacatatgattagagacacactttaa---aatagtgattgaaacata 923592  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 322 - 434
Target Start/End: Original strand, 14455449 - 14455561
Alignment:
Q  322 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcaga 421  Q
    ||||||||| ||||   ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  14455449 tatgaccacatatagatttcatttataaactttgacagaaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcata 14455548  T
Q  422 attatatattttt 434  Q
    ||| |||||||||    
T  14455549 attttatattttt 14455561  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 22996517 - 22996457
Alignment:
Q  20 atgaaatagagctaactgttgatgtgtaagttattaataatgaataaatccaaataacttatt 82  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||||||||||||||||||    
T  22996517 atgaaatagagctatctattgatgt--aagttattaataatgaataaatccaaataacttatt 22996457  T

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Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 153 - 368
Target Start/End: Original strand, 46833160 - 46833357
Alignment:
Q  153 tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag 252  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||||| |||  |           ||||||||| |||||| || ||||||| ||||    
T  46833160 tgcattcatttttaaactctaaaaagacaccatttttttatctaaactctaaaaaga-----------caccatttt-caatcgaaactcttaaa-gaag 46833246  T
Q  253 aaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattgatacattagttttatgaccacttataagcttcatttataaact 352  Q
    ||||||| ||||||||||||||  |||||| ||||    ||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  46833247 aaaaacacatgattagagacac--tttaaaataatg---attgaaacatagttattgatacattagttttatgaccacatataggcttcatttataaact 46833341  T

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Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 322 - 434
Target Start/End: Complemental strand, 27446050 - 27445935
Alignment:
Q  322 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgc 418  Q
    ||||||||| ||||   |||||||||||||||||||||||||||||| ||    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  27446050 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgc 27445951  T
Q  419 agaattatatattttt 434  Q
    | |||||||| |||||    
T  27445950 ataattatattttttt 27445935  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 310
Target Start/End: Original strand, 27540883 - 27541035
Alignment:
Q  153 tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag 252  Q
    ||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||| | |       ||| |||||||||||  || |||| |||||||    
T  27540883 tgcattcatttataagctataa-aagacaccatttttctatctaaactcttaaagaactataaaacgacactatttttcaatcaaaattctt-aaagaag 27540980  T
Q  253 aaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattga 310  Q
    ||||||| ||||||| ||||| |||||||||   |||| |||||||||||||||||||    
T  27540981 aaaaacacatgattaaagacatactttaaat---tagtgattgaaacatagtaattga 27541035  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 45032186 - 45032127
Alignment:
Q  150 agttgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa 209  Q
    |||||||| ||||| |||||||| | ||||||| ||||| ||||||| ||||||||||||    
T  45032186 agttgcatacatttataaactcttaaaagacacaattttactatctacactcttaaagaa 45032127  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 4357264 - 4357204
Alignment:
Q  148 tcagttgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa 209  Q
    |||| |||||||||||| ||||||| | |||||||  ||||| |||||||||||||||||||    
T  4357264 tcagctgcattcatttccaaactctta-aagacacattttttatatctaaactcttaaagaa 4357204  T

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